|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Traes_1AL_6F5982F88.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
Family |
M-type_MADS |
Protein Properties |
Length: 79aa MW: 9082.63 Da PI: 10.1862 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_1AL_6F5982F88.1 | genome | IWGSC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.7 | 3.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRrng+lKKA+ELSvLCd+eva+ +f ++g+lye+ss
Traes_1AL_6F5982F88.1 9 KRIENETSRQVTFSKRRNGLLKKAFELSVLCDVEVALAVFCPRGRLYEFSS 59
79***********************************************96 PP
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3mu6_A | 4e-16 | 3 | 59 | 2 | 58 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-16 | 3 | 59 | 2 | 58 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-16 | 3 | 59 | 2 | 58 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-16 | 3 | 59 | 2 | 58 | Myocyte-specific enhancer factor 2A |
5f28_A | 6e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 6e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 6e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 6e-16 | 1 | 59 | 1 | 59 | MEF2C |
6byy_A | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 5e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6c9l_C | 6e-16 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-16 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-16 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-16 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:24121311}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM502862 | 2e-78 | AM502862.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM1B (WM1B gene). |
GenBank | DQ512363 | 2e-78 | DQ512363.1 Triticum aestivum MADS-box transcription factor TaAGL7 (AGL7) mRNA, complete cds. |
Publications
? help Back to Top |
- Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol., 2004. 136(1): p. 2621-32 [PMID:15375207] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]
|