![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_5B5A264A8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 70aa MW: 8047.16 Da PI: 9.5797 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 1 | 44 | 5 | 45 |
-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 T+ E + + +a + +G W+++a+ mg ++++ q++ ++q Traes_1AL_5B5A264A8.1 1 TKKENKMFEEALAYYGVSapnLWDKVASAMGGTKSAQQVRRHFQ 44 7889999999999999999999*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 3.4E-6 | 1 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.02E-10 | 1 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.234 | 1 | 51 | IPR017930 | Myb domain |
CDD | cd00167 | 4.98E-5 | 1 | 47 | No hit | No description |
Gene3D | G3DSA:1.10.150.60 | 3.5E-4 | 13 | 55 | IPR001606 | ARID DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 70 aa Download sequence Send to blast |
TKKENKMFEE ALAYYGVSAP NLWDKVASAM GGTKSAQQVR RHFQILLDDV ESIEHGRIPF 60 PKYKTQGFWT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-17 | 3 | 67 | 14 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176377.1 | 3e-43 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-20 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3B5Z5I3 | 3e-42 | A0A3B5Z5I3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KCJ3 | 3e-42 | A0A446KCJ3_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_5B5A264A8.1 | 9e-47 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-22 | RAD-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|