PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_4E924201A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 342aa MW: 36738.9 Da PI: 6.6751 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.7e-31 | 183 | 241 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+ Traes_1AL_4E924201A.1 183 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 241 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 175 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 177 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 179 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-38 | 182 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-26 | 184 | 241 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MRDLFWLSPG EQGDLSDVVR ASLHPPHQLP TPAADEEEED EYSSLLLEGG GGGGGLVVGH 60 GDEQLGMVAM MMGGNNSSRP PSSDHHVISL HSPPATTYTR PHPEPLAGML RRPGFEREGD 120 MVVGPPPEIG DRLQHMSIAH HPRVPTAMKP RKSQSKKVVC IPAPTAAPGA SGRHSTSGEV 180 VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRTDPNML VITYTSDHNH 240 PWPTQRNALA GSTRPSSSSA AAAKIAASSS SSLAAAAARN SSNTNVDVDC AGAHHQLKQE 300 SDLDLFADMD ALSVFSSIDK IQEDDSKQQL FDPFSSGFCD YI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-24 | 152 | 244 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-24 | 152 | 244 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC018727 | 5e-79 | AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 5e-79 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 5e-79 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | KC954610 | 5e-79 | KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159325.1 | 0.0 | uncharacterized protein LOC109744570, partial | ||||
TrEMBL | A0A3B5XZI6 | 0.0 | A0A3B5XZI6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_4E924201A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11847 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-57 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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