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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Traes_1AL_4B89B33E3.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family |
LBD |
| Protein Properties |
Length: 264aa MW: 27102.4 Da PI: 7.7804 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_1AL_4B89B33E3.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 140.3 | 6.5e-44 | 36 | 134 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+
Traes_1AL_4B89B33E3.1 36 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLR 123
7*************************************************************************************** PP
DUF260 89 qlkaelallke 99
ql+++l++++
Traes_1AL_4B89B33E3.1 124 QLQQDLSRARY 134
******99875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MASSSASSFP GSVITMASSA AAVGAASSGA AGTGSPCAAC KFLRRKCQPD CVFAPYFPPD 60
NPQKFVHVHR VFGASNVTKL LNELNPYQRE DAVNSLAYEA DMRLRDPVYG CVGVISVLQH 120
QLRQLQQDLS RARYELSKYQ AAAAVAVSAS VGCNGAPAMA DFIGNTVPNC TQNFINISHS 180
TAIGAGLGFG HDQFAAVQML ARSYEGEGAV ARLGVNGGSG SGGYDFGYTS AMGVGPVSGL 240
GPLSGGPFLK PGTAGGDERH TAAQ
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| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134933 | 1e-129 | AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence. |
| GenBank | AC137617 | 1e-129 | AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence. |
| GenBank | AP014961 | 1e-129 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
