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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_489411063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 102aa MW: 11753.1 Da PI: 9.2764 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.3 | 2.5e-08 | 53 | 102 | 2 | 46 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkv 46 ++R+++ +eq+++Le F++ +p ++e++++ +l ++ +++V++ Traes_1AL_489411063.1 53 KPRWNPRPEQIRILEGIFNSgVVNPPRDEIRRIRLRLqeygHVADANVFY 102 89*****************99*************9998888888888875 PP | |||||||
2 | Wus_type_Homeobox | 77.8 | 1.4e-25 | 52 | 102 | 2 | 52 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfy 52 +++RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG++ d+NVfy Traes_1AL_489411063.1 52 TKPRWNPRPEQIRILEGIFNSGVVNPPRDEIRRIRLRLQEYGHVADANVFY 102 689***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 5.8E-6 | 53 | 102 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MASSNKHWPS MFRSNPAACD FHHQPDMSNT HTRPSLISSG LDQETTRSPG ETKPRWNPRP 60 EQIRILEGIF NSGVVNPPRD EIRRIRLRLQ EYGHVADANV FY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490242 | 6e-51 | AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169224.1 | 7e-70 | WUSCHEL-related homeobox 12-like | ||||
Swissprot | A3B6V0 | 1e-39 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A3B5Y669 | 6e-69 | A0A3B5Y669_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6A1G1 | 7e-69 | A0A3B6A1G1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446JBK7 | 6e-69 | A0A446JBK7_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A452ZWY6 | 7e-69 | A0A452ZWY6_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QTU6 | 4e-69 | N1QTU6_AEGTA; WUSCHEL-related homeobox 12 | ||||
STRING | EMT01027 | 6e-70 | (Aegilops tauschii) | ||||
STRING | Traes_1AL_489411063.1 | 1e-71 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-37 | homeobox-3 |
Publications ? help Back to Top | |||
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