PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_3B659AABA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 482aa MW: 53620.4 Da PI: 6.7516

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_3B659AABA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	172	200	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Traes_1AL_3B659AABA.1 172 KTERRLAQNREAARKSRLRKKAYVQQLET 200 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-5	168	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.933	170	214	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-7	170	211	No hit	No description
Pfam	PF00170	6.6E-9	172	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	172	207	No hit	No description
PROSITE pattern	PS00036	0	175	190	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.9E-27	253	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MPKAWILREL QPAAAAYFGE LEEALIHGTC AAGIDPVMIE SDAHTKSAAV TAAAGYLAAR 60 PPTLEIFPSW PMSHLQQPYS GNSQSVGSTD SSSAQNTMSQ AELVSPVSMR TDSGQQQQNQ 120 QEALMVTIDD YNYSQGLGAA PATAPSFQQH AGAQDKRKHG STRKDGKLVD PKTERRLAQN 180 REAARKSRLR KKAYVQQLET GRIRLQQIEQ EIQRGRSQGL LTGGCSAPGE MSSAAVMFDM 240 EYARWLDEDN KYMAEIQGAL QAQVLDANLG TIVEDCMRHH DELFHLRAVL ARSDVFHLMT 300 GMWATQSERC FLWMAGFRPS EILKMLIPQL DPSTKQQLLG MCNLQQSSEQ AEEALEQGLK 360 QLHQSLADAV GAGPLNDGAD VANYTGLMAL ALDRLNNLES FYRQADNLRQ QTLHHMRRIL 420 TTRQTARCFV SLGEYHRRLR ALSSIWASRP RENFMMPENV SSTATEFQSV HQQPQQNQFS 480 GL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MPKAWILREL QPAAAAYFGE LEEALIHGTC AAGIDPVMIE SDAHTKSAAV TAAAGYLAAR  60
PPTLEIFPSW PMSHLQQPYS GNSQSVGSTD SSSAQNTMSQ AELVSPVSMR TDSGQQQQNQ  120
QEALMVTIDD YNYSQGLGAA PATAPSFQQH AGAQDKRKHG STRKDGKLVD PKTERRLAQN  180
REAARKSRLR KKAYVQQLET GRIRLQQIEQ EIQRGRSQGL LTGGCSAPGE MSSAAVMFDM  240
EYARWLDEDN KYMAEIQGAL QAQVLDANLG TIVEDCMRHH DELFHLRAVL ARSDVFHLMT  300
GMWATQSERC FLWMAGFRPS EILKMLIPQL DPSTKQQLLG MCNLQQSSEQ AEEALEQGLK  360
QLHQSLADAV GAGPLNDGAD VANYTGLMAL ALDRLNNLES FYRQADNLRQ QTLHHMRRIL  420
TTRQTARCFV SLGEYHRRLR ALSSIWASRP RENFMMPENV SSTATEFQSV HQQPQQNQFS  480
GL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370195	0.0	AK370195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106J11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176121.1	0.0	transcription factor TGAL5-like isoform X4
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A3B5Y2L9	0.0	A0A3B5Y2L9_WHEAT; Uncharacterized protein
STRING	Traes_1AL_3B659AABA.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-114	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]