PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_2AC682D6D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 27611.7 Da PI: 6.376 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.3 | 2.1e-10 | 104 | 161 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +R+ +i+eLe kv+ L++e ++L +l +l+ ++ l ++ Traes_1AL_2AC682D6D.1 104 KRVKRVLANRQSAARSKERRMRYIAELEHKVQILQTEATTLSAQLTHLQRDSSGLATH 161 999*********************************************9888776655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-15 | 100 | 164 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.542 | 102 | 165 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.09E-11 | 104 | 154 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.5E-11 | 104 | 158 | No hit | No description |
Pfam | PF00170 | 1.4E-9 | 104 | 159 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.05E-19 | 105 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MPPANGADSS ENESEDYSGV ESQVFLWGEA GRKRNAAGEP AAAATRHARS LSMDSLMGKL 60 SFSANGGEPS KFSLEFGSGE FTPAEMKRIM ADEKLAEMAL ADPKRVKRVL ANRQSAARSK 120 ERRMRYIAEL EHKVQILQTE ATTLSAQLTH LQRDSSGLAT HNNELKFRLQ AMEQQAQLRD 180 ALNEALTGEV QRLKQSATSE RGGDAGSSSN LAQQMQLRCQ NQMLEMHKQQ QQQIPFYQLE 240 QPEQNGESN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK366826 | 0.0 | AK366826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047D05. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170859.1 | 1e-160 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 9e-48 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A3B5XZ64 | 1e-178 | A0A3B5XZ64_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_2AC682D6D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.3 | 4e-73 | bZIP family protein |