PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_0B583488F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 251aa MW: 27776.7 Da PI: 9.6717 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.5 | 3.3e-28 | 29 | 80 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eCl+NhAa+ GghavDGCgEfmps + + l+CaACgCHR+FHRr+ Traes_1AL_0B583488F.1 29 EARYRECLRNHAAAQGGHAVDGCGEFMPS----SAHDLLRCAACGCHRSFHRRDDG 80 689*************************9....5678****************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.7E-24 | 30 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-17 | 30 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-24 | 31 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.048 | 32 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.65E-18 | 163 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 164 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-23 | 175 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEFTGPEHAA GTPPGTRSPS DASSGNSGEA RYRECLRNHA AAQGGHAVDG CGEFMPSSAH 60 DLLRCAACGC HRSFHRRDDG QQQQHPRLFL PAPGATSTTP TPRVPLLMPP PQQHHHPYAA 120 GHPQAPPFAY NPHHQHYQRT PSGGGTTTES SSEEPDPGPP STSAPGQGHG QAQRRKRFRT 180 RFTAEQREQM LALAERVGWR MLKQDEALVE QLCAQAGVRR QVFKVWMHNN KHHRRQPESQ 240 QQQQKQGRGM N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-23 | 176 | 232 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096968 | 2e-56 | FP096968.1 Phyllostachys edulis cDNA clone: bphyst021i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154848.1 | 1e-142 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | B8AX53 | 7e-72 | ZHD6_ORYSI; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A446JDX3 | 0.0 | A0A446JDX3_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_0B583488F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-25 | homeobox protein 22 |
Publications ? help Back to Top | |||
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