PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un1100_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 332aa    MW: 37162.4 Da    PI: 7.5727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un1100_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15259283226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ktelC+ +++tG C+yGd+C+FaHg
  Tp_un1100_001 259 KTELCNKWQETGACPYGDNCQFAHG 283
                    9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-19252290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-11255289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464257285IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8257284IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12259283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-12291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-8291325IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972295323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKDASTVTD LACVTALNSP PPPLSPQSDK SNNKQHQEDF AASFASLYNS IFSPESQFPS  60
SLSLSPSPPS SSSPPARVDT TTEHRLRQAR LILEYDELNE HYELCFSRLQ SLMTELDSLR  120
HENDALRQEN LDLLKLIHIS TSSSSSVSPP AVHNRHNRHQ ISDSDSQAEA GAYKHYRSAR  180
RNNPERTSLP KSISVRSPGY LKMMSQGSHG CGGANRQTSQ LSNFTSQLGS DSVSQKVCVP  240
TKGERDALEL EVYRQGMMKT ELCNKWQETG ACPYGDNCQF AHGIDELRPV IRHPRYKTEV  300
CRMIVTGATC PYGHRCHFRH SLTDQERMLL AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21258321467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp_un1100_001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132883e-83AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026843e-83CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391435.11e-172zinc finger CCCH domain-containing protein 14
RefseqXP_024009317.11e-172zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-144C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J3HSH11e-177A0A1J3HSH1_NOCCA; Zinc finger CCCH domain-containing protein 14 (Fragment)
STRINGXP_006391435.11e-172(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-141C3H family protein