PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0302_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 290aa MW: 33055.6 Da PI: 9.3294

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0302_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.9	1.1e-17	9	50	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+ r++tf kR+ng++KK +ELS+LC+++++ ii+s+ + Tp_un0302_001 9 ISNNYSRKITFQKRKNGVMKKVKELSTLCGINACAIIYSPYN 50 99*************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	1.0E-7	1	21	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.881	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-20	1	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-23	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.88E-31	2	83	No hit	No description
Pfam	PF00319	3.3E-16	9	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-7	21	36	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRKLKLALIS NNYSRKITFQ KRKNGVMKKV KELSTLCGIN ACAIIYSPYN SNPEVWPSES 60 GVRRVVSDFQ ELSEVDQRKK MVDQEIFLKQ RIAKASDQLK RQIKENREME MTEVMFQCLL 120 GRMRMFNLNV VDLNDLGYLI KKFITDLNRR IDILGNSSTE IGESSNDAVV AAAAPSERIG 180 SLAVVAATTT PATVIYEVGS SSSSAAAAAF FNPIQHQHYH QQFRRPAVPH VGLYEQLAIL 240 NQSHQQQPFM ETMNHPNQRS YVAEHMGFPF MDGNHHNCNH HHHHHNQPQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199678.1	1e-105	AGAMOUS-like 80
Swissprot	Q9FJK3	1e-106	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	S6B3Z3	1e-105	S6B3Z3_TURGL; Agamous-like MADS-box protein AGL80 (Fragment)
TrEMBL	S6C676	1e-105	S6C676_ARAHH; Agamous-like MADS-box protein AGL80 (Fragment)
STRING	XP_006408017.1	1e-105	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-98	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]