PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0122_003
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family FAR1
Protein Properties Length: 603aa    MW: 69072 Da    PI: 6.9912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0122_003genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1324e-101180190
           FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                   +fY+eYA+++ F+ +  +++        t r+fvCs + +++++  +              C+a+++++++ ++kw+vtk+++eH+H la
  Tp_un0122_003 11 SFYDEYARQLAFTSKPLTKTD-------TAREFVCSSSKRSKRRPAE-------------ICDAMVRIEMNGQDKWVVTKFVKEHSHGLA 80
                   59*********9887765444.......4899***987666665555.............8**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-63980IPR004330FAR1 DNA binding domain
PfamPF105511.5E-22205296IPR018289MULE transposase domain
PROSITE profilePS5096610.608483519IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-10488517IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-8494521IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEFSSEKEAK SFYDEYARQL AFTSKPLTKT DTAREFVCSS SKRSKRRPAE ICDAMVRIEM  60
NGQDKWVVTK FVKEHSHGLA SPNTLHCLRP RRHFANSEKS NYQGANVPSG MMYVSMDGSR  120
VPLESNNRGA RGASKATLSY GPMGTNTKRT LGRDAHNLLE YFKRMQAENP GFFYAIQLDE  180
DNQMTNVFWA DSRSRIAYTN FGDTVTLDTR YRCNQFRVPF APFTGVNHHG QTILFGCGLI  240
LDESDASFIW LFKTFLTAMR DQPPVSLVTD QDRAIQIAAA QVLPGARHCI NKWDVLREGQ  300
EKLAHVCLAY PSFQVELYNC INFTETIEEF ESSWSSIIEK YDLGRHEWLC SLYNARAQWV  360
PVYFRDSFFP AVFPSQGYPG SFFDGYVNQQ TTLPMFFRLY ERAMDSWFEM ETEADLDTVN  420
TPPVLKTPSP MENQAANLFT QRIFAKFQEE LVETFAYTAN RIDDDGTTST FRVAKFENNN  480
KAYIVTFCYP EMRANCSCQM FEHSGILCRH VLTVFTVTNI LTLPPQYILR RWTRNAKSVV  540
GLDEHVSENG HDSLIHRYNH LCREAIKPQS VADLNLPRMA PVSLHRDDGA PENMVSRGNL  600
SHT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533200.0AK353320.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408658.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLE4MXS30.0E4MXS3_EUTHA; mRNA, clone: RTFL01-24-K11
TrEMBLV4NTS10.0V4NTS1_EUTSA; Uncharacterized protein
STRINGXP_006408658.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]