PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0074_007
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BES1
Protein Properties Length: 325aa    MW: 34739.4 Da    PI: 6.7571
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0074_007genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222143.7e-6621451149
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq 95 
                    ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkg++++ e++e++g sa+asp+ss+q
  Tp_un0074_007   2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVELDGTTYRKGCSRPvERMEIGGGSATASPCSSYQ 97 
                    5899**********************************************************************999******************* PP

         DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                            +sp++sy++sp ss+f+sp+s+++++l+s   +sl+p+l++ls++sss
  Tp_un0074_007  98 --------PSPCASYNPSPVSSNFMSPASSSFANLTSGdgQSLIPWLKHLSATSSS 145
                    ........**********************9999998788**********997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.4E-633140IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG  60
WIVELDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP CASYNPSPVS SNFMSPASSS  120
FANLTSGDGQ SLIPWLKHLS ATSSSSASSS SRLPNYLYIP GGSISAPVTP PLSSPTARTP  180
RMNPDWQQIN NSFFVSSTPP SPTRQTIPDS EWFSGIQLAQ SVPASPTFSL VSQNPFGFKE  240
EAASAGGGGG GSRMWTPGQS GTCSPAIPPG ADQTADVPMS EAVDPPEFAF GSNTNGLVKA  300
WEGERIHEES GSDDLELTLG NSSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-22675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-22675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-22675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-22675372441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504300.0AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBankAY0903310.0AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417476.10.0PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV880.0BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A178WLH50.0A0A178WLH5_ARATH; BEH4
STRINGXP_010417476.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-179BES1/BZR1 homolog 4