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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un0042_004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 227aa MW: 26544.8 Da PI: 8.1342 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.3e-11 | 128 | 174 | 3 | 49 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++++ +r+++NRe+A+rsR RK+ ie+L+++v L eN++L ++l Tp_un0042_004 128 DDRKRKRMESNRESAKRSRIRKQRHIENLRDEVNRLGLENRELGNRL 174 57899************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-14 | 126 | 190 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.2E-10 | 128 | 174 | No hit | No description |
PROSITE profile | PS50217 | 10.289 | 128 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.4E-9 | 129 | 174 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-10 | 130 | 177 | No hit | No description |
CDD | cd14702 | 2.49E-15 | 131 | 175 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 133 | 148 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MMSTVPAFCF AEPDLVNQLS DFQTGFTPWD FDCSDLFSVI RSTIEPVIPG PCSGECETGF 60 VRINTDFYDK KSGSNEYCTG HVKTNSGSDD SNCFQGVPSP QSDELDSEIK ATKHNRKTLN 120 RPVLLITDDR KRKRMESNRE SAKRSRIRKQ RHIENLRDEV NRLGLENREL GNRLRIFLYH 180 IEQISTDNNR LLSEQEILRR RFSEMRQILI LRQFQNQQQW GRNHQMI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404751.1 | 1e-124 | regulatory protein opaque-2 | ||||
TrEMBL | A0A1J3G131 | 1e-127 | A0A1J3G131_NOCCA; Basic leucine zipper 43 (Fragment) | ||||
STRING | XP_006404751.1 | 1e-123 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 1e-112 | basic leucine-zipper 6 |