PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0012_005

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 850aa MW: 96023.7 Da PI: 6.6721

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0012_005	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.5	5.9e-10	52	121	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA+++ F+ + +++ t r+fvCs + +++++ + C+a+++++++ ++kw+vtk+++eH+H la Tp_un0012_005 52 SFYDEYARQLAFTSKPLTKTD-------TAREFVCSSSKRSKRRPAE-------------ICDAMVRIEMNGQDKWVVTKFVKEHSHGLA 121 59*******9887765444.......4899987666665555.............8*************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-6	80	121	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-22	246	337	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	524	560	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-9	529	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MENHGMGDDR DGDPSACSGT NHIENSLGVQ DEIGVAEPCV GMEFSSEKEA KSFYDEYARQ 60 LAFTSKPLTK TDTAREFVCS SSKRSKRRPA EICDAMVRIE MNGQDKWVVT KFVKEHSHGL 120 ASPNTLHCLR PRRHFANSEK SNYQGANVPS GMMYVSMDGS RVPLESNNRG ARGASKATLS 180 YGPMGTNTKR TLGRDAHNLL EYFKRMQAEN PGFFYAIQLD EDNQMTNVFW ADSRSRIAYT 240 NFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTILFGCGL ILDESDASFI WLFKTFLTAM 300 RDQPPVSLVT DQDRAIQIAA AQVLPGARHC INKWDVLREG QEKLAHVCLA YPSFQVELYN 360 CINFTETIEE FESSWSSIIE KYDLGRHEWL CSLYNARAQW VPVYFRDSFF PAVFPSQGYP 420 GSFFDGYVNQ QTTLPMFFRL YERAMDSWFE METEADLDTV NTPPVLKTPS PMENQAANLF 480 TQRIFAKFQE ELVETFAYTA NRIDDDGTTS TFRVAKFENN NKAYIVTFCY PEMRANCSCQ 540 MFEHSGILCR HVLTVFTVTN ILTLPPQYIL RRWTRNAKSV VGLDEHVSEN GHDSLIHRYN 600 HLCREAIKYA EEGAITTETY NIALGALKEG EKKVSVVRKN VGRSAPLSSN GGGIGFDEKT 660 SAADSTPLLW PRQDEMMRRF NLNDGGVRPQ SVADLNLPRM APVSLHRDDG APENMVALPC 720 LKSMTWDWGM ESKNTIPGGK VAIIKLKLHD YRKFPSADME VKFQLSSVTL EPMLRSMAYI 780 SDQLSAPANR VAVINLKLQD TETTTGESEV KFQVSRDALG AMLRSMAYIR EQLAIVGLLQ 840 TEPQAKKLRK

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MENHGMGDDR DGDPSACSGT NHIENSLGVQ DEIGVAEPCV GMEFSSEKEA KSFYDEYARQ  60
LAFTSKPLTK TDTAREFVCS SSKRSKRRPA EICDAMVRIE MNGQDKWVVT KFVKEHSHGL  120
ASPNTLHCLR PRRHFANSEK SNYQGANVPS GMMYVSMDGS RVPLESNNRG ARGASKATLS  180
YGPMGTNTKR TLGRDAHNLL EYFKRMQAEN PGFFYAIQLD EDNQMTNVFW ADSRSRIAYT  240
NFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTILFGCGL ILDESDASFI WLFKTFLTAM  300
RDQPPVSLVT DQDRAIQIAA AQVLPGARHC INKWDVLREG QEKLAHVCLA YPSFQVELYN  360
CINFTETIEE FESSWSSIIE KYDLGRHEWL CSLYNARAQW VPVYFRDSFF PAVFPSQGYP  420
GSFFDGYVNQ QTTLPMFFRL YERAMDSWFE METEADLDTV NTPPVLKTPS PMENQAANLF  480
TQRIFAKFQE ELVETFAYTA NRIDDDGTTS TFRVAKFENN NKAYIVTFCY PEMRANCSCQ  540
MFEHSGILCR HVLTVFTVTN ILTLPPQYIL RRWTRNAKSV VGLDEHVSEN GHDSLIHRYN  600
HLCREAIKYA EEGAITTETY NIALGALKEG EKKVSVVRKN VGRSAPLSSN GGGIGFDEKT  660
SAADSTPLLW PRQDEMMRRF NLNDGGVRPQ SVADLNLPRM APVSLHRDDG APENMVALPC  720
LKSMTWDWGM ESKNTIPGGK VAIIKLKLHD YRKFPSADME VKFQLSSVTL EPMLRSMAYI  780
SDQLSAPANR VAVINLKLQD TETTTGESEV KFQVSRDALG AMLRSMAYIR EQLAIVGLLQ  840
TEPQAKKLRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353320	0.0	AK353320.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408658.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	E4MXS3	0.0	E4MXS3_EUTHA; mRNA, clone: RTFL01-24-K11
TrEMBL	V4NTS1	0.0	V4NTS1_EUTSA; Uncharacterized protein
STRING	Cagra.5679s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]