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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un0010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 66553.3 Da PI: 7.1532 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.4e-09 | 391 | 428 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Tp_un0010_001 391 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 428 554459******************************88 PP | |||||||
2 | BELL | 103.2 | 1.8e-33 | 249 | 320 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLl +lee+++rY +y+eq++ +++Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi Tp_un0010_001 249 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAGAFEAAVGIGAAEMYTALASRAMSRHFRCLKDGLVGQI 320 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 3.3E-41 | 177 | 316 | IPR006563 | POX domain |
SMART | SM00574 | 9.7E-65 | 183 | 318 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 369 | 432 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.59E-10 | 372 | 433 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 372 | 436 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-17 | 373 | 439 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-28 | 375 | 439 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.7E-18 | 389 | 428 | IPR008422 | Homeobox KN domain |
CDD | cd00102 | 0.00354 | 465 | 540 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MINQIPGFDG TNQNPNVHHH QQQHHYNHQI FGSNSNMGMM IDFSKQHEIR MTSGMDHHHH 60 HHHQTSGGTD QNQLLEDSSS SMRLCNVNNN FSSEVNDERP PQRPSQGLSL SLSSSNPTSI 120 SLQSFDLRPQ QQQLQGYSGK STHHQNLPHS QMMLMMMNSQ QQNNTSNLHH HHHQFQIGSS 180 KFLSPAQELL SDFCSLGVKE SDDEVMMMKH KRKQKGKQQE EWDTSNNDQQ DQSATTSSKK 240 HVPPLHSLEF MELQKRKAKL LAMLEELKRR YGHYREQMRL AAGAFEAAVG IGAAEMYTAL 300 ASRAMSRHFR CLKDGLVGQI QATSQALGER DDDNRGVSIA ARGETPRLRL LDQALRQQKS 360 YRQMSLVEAH PWRPQRGLPE RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN 420 WFINARVRLW KPMIEEMYCE ETRGEEQQME ITNPMFIDTK PDPNQIMRVE PESLSAIVTK 480 TGHKDNSNQQ GTVSFGSTFD FSSYGGNQAV TYTGEGGTRD VSLTLGLQNG GVSLALSPVT 540 AQVGPLYYGR DHIEGSVQYQ PSMLDDDQAQ NLPYRNLMGA QLLHDMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 378 | 436 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 378 | 436 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352866 | 0.0 | AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637027.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A3P6CG88 | 0.0 | A0A3P6CG88_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g142080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Publications ? help Back to Top | |||
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