PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g37430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 721aa    MW: 80630.9 Da    PI: 7.7145
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g37430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.23.3e-28452503152
     RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                aek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Tp7g37430 452 AEKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 503
                589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557814.36E-7210362IPR029016GAF domain-like
Gene3DG3DSA:3.30.450.403.0E-4212362IPR029016GAF domain-like
PROSITE profilePS5151917.154439523IPR003035RWP-RK domain
PfamPF020423.8E-25456503IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2401.1E-20628715No hitNo description
SuperFamilySSF542778.5E-20629717No hitNo description
PROSITE profilePS5174522.345631716IPR000270PB1 domain
SMARTSM006664.0E-23631716IPR000270PB1 domain
CDDcd064071.97E-40632715No hitNo description
PfamPF005645.0E-18632715IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006107Biological Processoxaloacetate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050152Molecular Functionomega-amidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEESNNSGVV DFPDNFMDQL LWEEEEEASL SSPIGWKERV TCAMGHLQEV MGREKELLIQ  60
LWVPVERGGR RVLSTEEQPF SLNQSQSLLA LYRDVSAGYS FAAEAESDQL VGLPGRVFLR  120
RMPEWTPDVR LFRSEEYPRI GYARRYKVRA SLALPLFQGP SGNCLAVMEM VTTHHSLEYA  180
SQLHTICHAL QTFDLRSSKT SIIPTSLKSH TDDLHQEVAS ILQGICSSYG LPLAITWGQQ  240
QESCLSAIVS ACYTADQNSR CFLAVCSDHH LLAGEGIAGT AFATKKQCFA TDVAILSNWS  300
YPLSHYARMF DLHAALAVPL LTRRNRTVQF VLEFFIPRDC LHTHTQRLIL DSLASQLSLR  360
VQSSPHLMVD QEIRDTLTPL TADHSSGSAE QLVAEESPWI SRMTPEAKGK QVSVSWEYQR  420
DELKLGGGVR EPSFSLSPSS SSLQNRKRKT KAEKDITLDI LRQHFAGSLK DAAKNIGVCP  480
TTLKRICRQH GISRWPSRKI KKVGHSLRKL QVVMDSVEGV QGSLHLASFY SSFPQLQSSS  540
SSSSFSLLNP TQTVHMPTKS LPPSSGTQSS SGSSTCCSFE EQQLGGFHKP ALSHPQLLTL  600
SSLQEEQRPV RVTSSLPPLP SPKAPRKAKD GMKVKAMFGD SKMMMSLQPH WRVTDLRREI  660
AKRFGMDDVL RSNVNLKYLD DDQEWVLLTC DADLEECIQV YKTSLKETIR ILVHHPLSSF  720
L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g37430
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0695580.0AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBankAL0355380.0AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL0355390.0AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBankAL1615930.0AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411620.10.0protein NLP3
SwissprotQ9SVF10.0NLP3_ARATH; Protein NLP3
TrEMBLV4MK940.0V4MK94_EUTSA; Uncharacterized protein
STRINGXP_006411620.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152871718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.10.0Nin-like family protein
Publications ? help Back to Top
  1. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]