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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp7g32320 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
bHLH |
| Protein Properties |
Length: 341aa MW: 38027.8 Da PI: 5.8523 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp7g32320 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 31.6 | 2.9e-10 | 192 | 239 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+++Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq
Tp7g32320 192 SHSIAERARREKISERMKYLQDLVPGC----AKITGKAGMLDEIINYVQSLQ 239
8*************************8....688*****************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009911 | Biological Process | positive regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MMMNDGFTEA ELLLNCTNMS VLERQRAHLK YHHPGLDSTL AGFFANSSTT NGGDIDGFLP 60
TAGLALPAIY VETMTESDAT LLIPPENITT SASFGSGNFK KRKFDSVFTE TKDCNEKKMM 120
MMNREEVVLG EEEEKSKITE QNNESSRSIT KMKNRAKKEQ NNCSNDSSKS TKESQKTDYI 180
HVRARRGQAT DSHSIAERAR REKISERMKY LQDLVPGCAK ITGKAGMLDE IINYVQSLQR 240
QVEFLSMKLA TVSPRVNFDI DDIFAKEVAS APVTNLPNTV MPSHEMVDSG YSHEMVNSGY 300
IHFNPMQHVA TSSDPLSCFN NGQAPSMWDS DVQNLYSSLG L
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G34530.1 | 1e-161 | cryptochrome-interacting basic-helix-loop-helix 1 |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Yang D,Zhao W,Meng Y,Li H,Liu B
A CIB1-LIKE transcription factor GmCIL10 from soybean positively regulates plant flowering.
Sci China Life Sci, 2015. 58(3): p. 261-9
[PMID:25651969] - Katsura Y, et al.
An optogenetic system for interrogating the temporal dynamics of Akt.
Sci Rep, 2015. 5: p. 14589
[PMID:26423353] - Taslimi A, et al.
Optimized second-generation CRY2-CIB dimerizers and photoactivatable Cre recombinase.
Nat. Chem. Biol., 2016. 12(6): p. 425-30
[PMID:27065233] - Liu Q, et al.
The Blue Light-Dependent Polyubiquitination and Degradation of Arabidopsis Cryptochrome2 Requires Multiple E3 Ubiquitin Ligases.
Plant Cell Physiol., 2016. 57(10): p. 2175-2186
[PMID:27516416] - Pathak GP, et al.
Bidirectional approaches for optogenetic regulation of gene expression in mammalian cells using Arabidopsis cryptochrome 2.
Nucleic Acids Res., 2017. 45(20): p. e167
[PMID:28431041] - Duan L, et al.
Understanding CRY2 interactions for optical control of intracellular signaling.
Nat Commun, 2017. 8(1): p. 547
[PMID:28916751] - Quejada JR, et al.
Optimized light-inducible transcription in mammalian cells using Flavin Kelch-repeat F-box1/GIGANTEA and CRY2/CIB1.
Nucleic Acids Res., 2017. 45(20): p. e172
[PMID:29040770] - Liu Y, et al.
CIB1 and CO interact to mediate CRY2-dependent regulation of flowering.
EMBO Rep., 2019.
[PMID:30126927]
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