PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GATA

Protein Properties

Length: 306aa MW: 34073.7 Da PI: 4.5905

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g30660	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.4	8.2e-18	200	234	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Tp7g30660 200 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 234 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.2E-100	1	290	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	2.1E-17	194	244	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.438	194	230	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.38E-15	197	258	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-14	198	232	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.43E-15	199	246	No hit	No description
Pfam	PF00320	1.1E-15	200	234	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	200	225	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEQQLTPELF LVDDLLDFSN DDGQPDDGFE SFPDSFTLSA GNLADSSNSS SLYTDGSGFS 60 DDLCVPCEDL AELEWLSNFV EESFSKEDQD KLQLLSGLKK PQTTGLTQTH QIKPEPEPEP 120 ELDHIFIPTD TDTDDSNIAV PAKARSKRSR SAASTWASRL LAIAGSDESG PKKKHLRIKE 180 PESAGEIDFE GGETGGERRC LHCATDKTPQ WRTGPMGPKT LCNACGVRYK SGRLVPEYRP 240 ASSPTFVMAR HSNSHRKVME LRRQKEMRDE HLLSQLRCEN FLMDIKSNGD DFLIHNNNHV 300 APDLDT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00048	PBM	Transfer from AT4G32890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g30660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189565	0.0	AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412416.1	0.0	GATA transcription factor 9
Swissprot	O82632	1e-167	GATA9_ARATH; GATA transcription factor 9
TrEMBL	V4MBT3	0.0	V4MBT3_EUTSA; GATA transcription factor
STRING	XP_006412416.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5682	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	1e-154	GATA transcription factor 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]