PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 527aa    MW: 59451.8 Da    PI: 6.4498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.3e-1122901698
               EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               l+l  +f+++h        ++ l++  s r Wevkl  ++++    l++GW++F+  ++ ++gD +vF++dg++    +v+v +
  Tp7g29440 22 LTLDDEFLRSHT-------KVLLRSdASERIWEVKL--DGNR----LAGGWEKFAAVHNFRDGDDLVFRHDGDEIL--HVTVSS 90
               677778887775.......3455544999*******..9999....***********************9886555..887766 PP
2B364.51.6e-20160255197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                f+ + +++++l ++rl l ++f+     +++++ ++ l +e+gr+W++ l+ + +s+ +++++GW +F++angL++gD++ Fkl++ +++++++ ++
  Tp7g29440 160 FLRARVTPYSLIKDRLDLCRDFTIVSFDEHNKPCEIDLANEKGRKWTLLLSKNISSRVFYIRRGWVNFCSANGLRQGDICKFKLSE-NGERPLLLLC 255
                667788999*************8766555567779***************99999999*************************987.5666777776 PP
3B367.42e-21304401199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++v ++++ ++sg+l+++  f++e g+kk  s ++tl +++gr+W  +l+++++ g   ++l+kGW+e++kang+k++D++v++l++ +++ +++k+++
  Tp7g29440 304 FLTVKLTPNRFQSGQLYISSVFMSESGIKK--SGEITLLNKDGRKWPSYLQMTGQCGNewFYLRKGWREMCKANGVKVNDSFVLELVW-EDAIPMFKFCS 400
                7788899******************99985..458***************9966665567****************************.88889***998 PP

                S CS
         B3  99 k 99 
                k
  Tp7g29440 401 K 401
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.8792IPR003340B3 DNA binding domain
SMARTSM010192.4E-141092IPR003340B3 DNA binding domain
CDDcd100177.39E-82288No hitNo description
SuperFamilySSF1019367.26E-102789IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-103091IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-17159256No hitNo description
Gene3DG3DSA:2.40.330.102.8E-16160257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.931160257IPR003340B3 DNA binding domain
SMARTSM010196.5E-22160258IPR003340B3 DNA binding domain
PfamPF023622.4E-18160255IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-17161258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-20298401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-19301402IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-16303400No hitNo description
PROSITE profilePS5086312.816304401IPR003340B3 DNA binding domain
SMARTSM010194.9E-27304402IPR003340B3 DNA binding domain
PfamPF023621.9E-22304401IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MADPPTFSLF HQKFLTGDKP LLTLDDEFLR SHTKVLLRSD ASERIWEVKL DGNRLAGGWE  60
KFAAVHNFRD GDDLVFRHDG DEILHVTVSS QSNSSDIQHA SPSFVDTEID DDYAGSDDSD  120
DGEDESDDSD DDGGEDDAGD ILVNKNKKLE ADSSSGYSRF LRARVTPYSL IKDRLDLCRD  180
FTIVSFDEHN KPCEIDLANE KGRKWTLLLS KNISSRVFYI RRGWVNFCSA NGLRQGDICK  240
FKLSENGERP LLLLCPQESS NGHKEEECPE ADAVKTCAVG GCSKEKRTLD EVSKGKEDNT  300
PSPFLTVKLT PNRFQSGQLY ISSVFMSESG IKKSGEITLL NKDGRKWPSY LQMTGQCGNE  360
WFYLRKGWRE MCKANGVKVN DSFVLELVWE DAIPMFKFCS KIENKGKGNR ITRKKRPCET  420
ALHARTVEKT PRLEIEGRGV SKRGRTPVSK KPNTNSRKLQ RTQPESCSVS HQVANVKRSI  480
LDTLNTVRQF RAELETREKD LEASLLEVNA LGERILGISQ ILNHNLV
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g29440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412578.10.0B3 domain-containing protein REM1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLV4P3P10.0V4P3P1_EUTSA; Uncharacterized protein
STRINGXP_006412578.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.10.0B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]