PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g28850
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 306aa    MW: 32545.4 Da    PI: 7.4431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g28850genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11124169555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Tp7g28850 124 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 169
                99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-13117173No hitNo description
PROSITE profilePS5088817.301119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-9124169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNSSLLTPSS SSSSPHLQSP ASFDHDDFLH HIFSSAPWPS SVLDDAPPPT SVAGFHHHDV  60
DSRNQITMIP LSHHNPNDAG GLMKQGQTQT QSQATASTTT GGTTAPPQTK PKVRARRGQA  120
TDPHSIAERL RRERIAERMK SLQELVPNGN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  180
GGAASVSSQI SEDAGGSHEN TSGENQTTAK MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  240
ISLATTISTA TCQSRNPMIS TVKDAGVPLS PNLSVQSTNT AATPKTINGN GSSLVTVKDA  300
PSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g28850
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937110.0AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730749.21e-167transcription factor bHLH69-like
SwissprotQ8S3D51e-166BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0D3A2Z91e-165A0A0D3A2Z9_BRAOL; Uncharacterized protein
STRINGBo1g011740.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-134LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]