PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g28810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 478aa    MW: 52167.9 Da    PI: 5.4535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g28810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.3e-25181237259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s + ++v+ei+++g H he
  Tp7g28810 181 RDGYNWRKYGQKQVKSPKGSRSYYRCTYSDCCAKK-IECSIDSGNVIEIVNKGLHSHE 237
                7********************************98.*********************8 PP
2WRKY99.91.5e-31344400359
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ e++++v+itY+g Hnh+
  Tp7g28810 344 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVENTTAVIITYKGVHNHD 400
                9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-19176239IPR003657WRKY domain
SuperFamilySSF1182901.1E-19178239IPR003657WRKY domain
SMARTSM007744.8E-23180238IPR003657WRKY domain
PROSITE profilePS5081115.927182239IPR003657WRKY domain
PfamPF031061.4E-16182236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-32327402IPR003657WRKY domain
PROSITE profilePS5081132.386337402IPR003657WRKY domain
SuperFamilySSF1182905.1E-27338402IPR003657WRKY domain
SMARTSM007741.5E-35342401IPR003657WRKY domain
PfamPF031061.3E-23344400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDDKGSDEAD VYAVDKSMPE TDNSEKVEPE KELCDGENDG LSQLRDEESL GTTDADMEAL  60
HDEADREALA KDQVEGVREN SALEPNGEDV GEVKERASGK ESAVSAIVPV DEVAEENREV  120
ETSTAVTALL NPSMVDPSLS SNPSAAHGVS LVSIPTKQEP RSDSRVVSKF SLSPVMRTPA  180
RDGYNWRKYG QKQVKSPKGS RSYYRCTYSD CCAKKIECSI DSGNVIEIVN KGLHSHEPPR  240
KNSFSPREIR AASAIQPVSE DNTVVELALA PSDSAPSGST KENICQSLTI VERKRNCENE  300
DVEEPEPKRR LKKDNSQSSD SASKPGKKHK FVVHAAGDVG ISGDGYRWRK YGQKMVKGNP  360
NPRNYYRCTS AGCPVRKHIE TAVENTTAVI ITYKGVHNHD MPVPKKRHGP PSSMLVAAAA  420
PTSMRTRSDD RVNIPTSSQC SVGRESEKQS SEVLDVGGEK VMESARTLLS IGFEIKQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-25330402274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g28810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412655.10.0probable WRKY transcription factor 32
SwissprotP595830.0WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1J3JU260.0A0A1J3JU26_NOCCA; Putative WRKY transcription factor 32
STRINGBostr.7867s0950.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63382844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.10.0WRKY DNA-binding protein 32