PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 265aa    MW: 30678.6 Da    PI: 4.593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-115799754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  Tp7g27740 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99
               57*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9295099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-105499No hitNo description
SuperFamilySSF474592.75E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1656119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QEFEFDSWPL EEAFSGSGEW SSPDGAATSP ASAKNVVSER  60
NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESQSTLL  120
ENPTKDYDCI KNFLENQQQN LSDINLIMRS KKFRHMDYNT FGSSIPKVHN NHSLIEVLEM  180
KVTWMGEKTV VVCITCSKRR ETMLQLCKVL ESLNLNILTT NFSCFSSRLS TTLFLQADED  240
ERTTVETKIQ TAIAAYNDPS CLIDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1355116970Transcription factor MYC2
5gnj_B6e-1355116970Transcription factor MYC2
5gnj_E6e-1355116970Transcription factor MYC2
5gnj_F6e-1355116970Transcription factor MYC2
5gnj_G6e-1355116970Transcription factor MYC2
5gnj_I6e-1355116970Transcription factor MYC2
5gnj_M6e-1355116970Transcription factor MYC2
5gnj_N6e-1355116970Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g27740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304821e-133AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
GenBankAK1177301e-133AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAK1762011e-133AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1762761e-133AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK2282011e-133AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankBT0058691e-133BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412786.21e-172transcription factor bHLH27
SwissprotQ700E31e-135BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A1J3EJ611e-168A0A1J3EJ61_NOCCA; Transcription factor bHLH27 (Fragment)
TrEMBLA0A1J3GQB31e-168A0A1J3GQB3_NOCCA; Transcription factor bHLH27 (Fragment)
STRINGBo1g014720.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-156bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]