PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp7g23640

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 593aa MW: 66791.2 Da PI: 9.2552

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g23640	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.7e-06	62	83	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H Tp7g23640 62 KCEKCTREFCSPVNYRRHIRMH 83 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.868	61	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM 60 QKCEKCTREF CSPVNYRRHI RMHRRLRKPE KDSGKERDAL GAFWNKISVV DAKEILSLKS 120 MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL 180 DDASEKTFLC NEAAPMQKYI FDGENGKTVL DAKNVVACAS FLLEQRLIEA WLADKDAKAL 240 RCQNLLVEEE EAARRRQAEL LEKKKRKKLR QKEQRVKDQK KDAKEDESTT SEEQQSPAES 300 SSSLSVASDS EAQRSDSIPI EDSSSLEEPQ VLEMDNGRNG ETQAPMFDDD GYDNGQNMER 360 RSGRRHMEKR SQHGIPNGFH GNHAPKLGGI RKNGTNRDAR ANTTKVWSRK ANNQKSISVD 420 ASITEQDQTK KSEVLIGSVS VTIRNSCLSG EHNQTKCSEE VGRTKIVEAK STSEQSTVKV 480 WRPVSSQGRK VSTVEENADK EDKKNSSSTA PEVKTAHHIS LQFNNQEAKA FLAKRWKEAT 540 SAEHVTLVLS QETDMSGNST HESSNGVTAS RPKSRMKPEK GTKVKYVPKQ RIR

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCTREF CSPVNYRRHI RMHRRLRKPE KDSGKERDAL GAFWNKISVV DAKEILSLKS  120
MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL  180
DDASEKTFLC NEAAPMQKYI FDGENGKTVL DAKNVVACAS FLLEQRLIEA WLADKDAKAL  240
RCQNLLVEEE EAARRRQAEL LEKKKRKKLR QKEQRVKDQK KDAKEDESTT SEEQQSPAES  300
SSSLSVASDS EAQRSDSIPI EDSSSLEEPQ VLEMDNGRNG ETQAPMFDDD GYDNGQNMER  360
RSGRRHMEKR SQHGIPNGFH GNHAPKLGGI RKNGTNRDAR ANTTKVWSRK ANNQKSISVD  420
ASITEQDQTK KSEVLIGSVS VTIRNSCLSG EHNQTKCSEE VGRTKIVEAK STSEQSTVKV  480
WRPVSSQGRK VSTVEENADK EDKKNSSSTA PEVKTAHHIS LQFNNQEAKA FLAKRWKEAT  540
SAEHVTLVLS QETDMSGNST HESSNGVTAS RPKSRMKPEK GTKVKYVPKQ RIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	267	RRRQAELLEKKKRKK
2	261	268	EKKKRKKL
3	263	267	KKRKK
4	266	276	KKLRQKEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g23640

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413290.1	0.0	uncharacterized protein LOC18029908
Refseq	XP_024004636.1	0.0	uncharacterized protein LOC18029908
TrEMBL	V4MP25	0.0	V4MP25_EUTSA; Uncharacterized protein
STRING	XP_006413290.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein