PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 928aa    MW: 104190 Da    PI: 4.9144
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-1748101356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k  ++t++q++eLe+++++++ ps+e+++eL ++l+L++rq+++WFqN+R++ k
  Tp7g23550  48 KNARHTPQQIQELEKFYNECPLPSEEQKAELGRRLNLQTRQITFWFQNKRTQVK 101
                56789*********************************************9877 PP
2START115.38.7e-374606773205
                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                a  a++el+ + + ++ +W  +s    e +n++e+ +    + v    + +ea+r++g+v m++  lv++l   k  W   +a     a+t   i +g  
  Tp7g23550 460 ATVAMNELIMLGQTNSSFWRIDSaskrETLNYEEYKSFYNNGLVkppgYIMEASRETGLVYMNTLALVKTLTTNK--WIDVFApivfMASTRRLIPTGcg 557
                666899*****************8888888888876666444449999*****************9999988777..*********99999999****** PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      l l+ ae+q++splvp R++ f+Ry++ l++g wv+vd   ++++++ +  s   +++lpSg +i++++ng+s+vtw+e+++++++ +++l++ 
  Tp7g23550 558 gprsDSLKLIEAEFQVISPLVPkRKVKFLRYCKMLREGLWVVVD--FTPREENMNLISEGGSNRLPSGVIIKDMGNGYSEVTWIEQAEYEKSKIPELYQL 655
                ********************************************..777777766444455689************************************ PP

                HHHHHHHHHHHHHHHHTXXXXX CS
      START 184 lvksglaegaktwvatlqrqce 205
                l++sg+  gak+w+ tlqr+c+
  Tp7g23550 656 LIGSGIGLGAKRWLTTLQRHCA 677
                *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1738106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1739111IPR009057Homeodomain-like
PROSITE profilePS5007115.85643103IPR001356Homeobox domain
SMARTSM003892.1E-1446107IPR001356Homeobox domain
CDDcd000863.68E-1547104No hitNo description
PfamPF000468.3E-1548101IPR001356Homeobox domain
PROSITE profilePS5084830.656449681IPR002913START domain
SuperFamilySSF559616.73E-15453677No hitNo description
CDDcd088751.84E-75453677No hitNo description
SMARTSM002341.2E-27458678IPR002913START domain
PfamPF018527.3E-32460677IPR002913START domain
SuperFamilySSF559613.16E-11702894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006349Biological Processregulation of gene expression by genetic imprinting
GO:0009911Biological Processpositive regulation of flower development
GO:0031047Biological Processgene silencing by RNA
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MNGQEGDYDV YEYIHNVSFM ERAEDDERDD NNGATFGDND QNGGNTRKNA RHTPQQIQEL  60
EKFYNECPLP SEEQKAELGR RLNLQTRQIT FWFQNKRTQV KTHEERHENK ILRQENDILR  120
EEQEQLNQLL MLCPCIICRG PAYCGVVDCV VQQLKDENAR LKQKRDWVKS LLRNPIQLSV  180
SSYATQPLSS LMVSNPERNA PWKLDTMMNE RPTWLTSLSA AQPSSSIMIS NQRGNAPQEL  240
DSMMNEISTV LVYPRRNASP ELDSIMNELS TIIASPSALQ YSSSLVTSNP KGISPYELES  300
MMNEMSTLLV SPSASQPSSS LMVSSTGVNT SSELDTIKNE RSTLLVSQSA AQPSSSLLIS  360
NAERNSLLEL DWMMNESSML LVDPSAVQPS SSTMISIPRR NTLSELDSMM NERSTVLVSP  420
SAMQPSSSLM ISNQGENTLP DLDSVGETST INKKALLELA TVAMNELIML GQTNSSFWRI  480
DSASKRETLN YEEYKSFYNN GLVKPPGYIM EASRETGLVY MNTLALVKTL TTNKWIDVFA  540
PIVFMASTRR LIPTGCGGPR SDSLKLIEAE FQVISPLVPK RKVKFLRYCK MLREGLWVVV  600
DFTPREENMN LISEGGSNRL PSGVIIKDMG NGYSEVTWIE QAEYEKSKIP ELYQLLIGSG  660
IGLGAKRWLT TLQRHCASLL TLSTINLATV YQDLSSNVAT EIVKLVQRMT LSYYWGITGS  720
STRRWKRIHV ENEGHNMRLM TRKNVNLRGE PTGIILSAAT SVWFPVNKTT MFDFLSNMSS  780
RDQWDIFTTD AYIEEKIKIQ KSRSHDNYVS LLEILEEDHC ITVLQETWND ASGALMVYAP  840
VEMESIEEVM RGKASDSVPI LPSGFSILPD GGETEPDKNG GGCLLTIGYQ LLVSSKPYAD  900
VDQDFVKYVE KLMALTIDKI KSGLSIQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of time of flowering through the photoperiod flowering pathway. May repress FT. {ECO:0000269|PubMed:17189287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23550
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413300.20.0homeobox-leucine zipper protein HDG6
SwissprotQ9FVI60.0FWA_ARATH; Homeobox-leucine zipper protein HDG6
TrEMBLV4MP310.0V4MP31_EUTSA; Uncharacterized protein
STRINGXP_006413300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1872833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25530.10.0FLOWERING WAGENINGEN
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Rea M, et al.
    Determination of DNA methylation of imprinted genes in Arabidopsis endosperm.
    J Vis Exp, 2011.
    [PMID:21307831]
  3. Nakamura M, et al.
    The role of Arabidopsis thaliana NAR1, a cytosolic iron-sulfur cluster assembly component, in gametophytic gene expression and oxidative stress responses in vegetative tissue.
    New Phytol., 2013. 199(4): p. 925-35
    [PMID:23734982]
  4. Xu Y,Gan ES,He Y,Ito T
    Flowering and genome integrity control by a nuclear matrix protein in Arabidopsis.
    Nucleus, 2013 Jul-Aug. 4(4): p. 274-6
    [PMID:23836195]
  5. Jones AL,Sung S
    Mechanisms underlying epigenetic regulation in Arabidopsis thaliana.
    Integr. Comp. Biol., 2014. 54(1): p. 61-7
    [PMID:24808013]
  6. Buzas DM,Nakamura M,Kinoshita T
    Epigenetic role for the conserved Fe-S cluster biogenesis protein AtDRE2 in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(37): p. 13565-70
    [PMID:25197096]
  7. Bond DM,Baulcombe DC
    Epigenetic transitions leading to heritable, RNA-mediated de novo silencing in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(3): p. 917-22
    [PMID:25561534]
  8. Li Y, et al.
    An AP endonuclease functions in active DNA demethylation and gene imprinting in Arabidopsis [corrected].
    PLoS Genet., 2015. 11(1): p. e1004905
    [PMID:25569774]
  9. Sornay E,Forzani C,Forero-Vargas M,Dewitte W,Murray JA
    Activation of CYCD7;1 in the central cell and early endosperm overcomes cell-cycle arrest in the Arabidopsis female gametophyte, and promotes early endosperm and embryo development.
    Plant J., 2015. 84(1): p. 41-55
    [PMID:26261067]
  10. Wang L, et al.
    Tetrahydrofolate Modulates Floral Transition through Epigenetic Silencing.
    Plant Physiol., 2017. 174(2): p. 1274-1284
    [PMID:28450424]
  11. Gallego-Bartolomé J, et al.
    Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(9): p. E2125-E2134
    [PMID:29444862]