PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g23460

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 195aa MW: 22518 Da PI: 8.932

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g23460	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRr+g+lKKA+ELS+LCda+va i+fs++g+ly+++s Tp7g23460 9 KKIENETSRQVTFSKRRKGLLKKAHELSILCDAQVATIVFSQKGRLYDFAS 59 68***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.3	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-30	3	71	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.12E-39	3	70	No hit	No description
PRINTS	PR00404	1.5E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-29	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	6.68	62	156	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MVRGKIEIKK IENETSRQVT FSKRRKGLLK KAHELSILCD AQVATIVFSQ KGRLYDFASS 60 DMQKMMERWE IYRREYSGAE RLQKQQHVQE LKNQMAIMVN KIELLQLHCS LTIVRSRKAK 120 LTEDKIENLK AQIEGEREVL NEGSRLRQMF GEEPLWMQSR SLESEESAPS CGCGNMNISD 180 VVETGLSIGL PERQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	7e-20	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_B	7e-20	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_C	7e-20	3	72	2	71	Myocyte-specific enhancer factor 2A
3mu6_D	7e-20	3	72	2	71	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269\|PubMed:21609362}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g23460

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189309	9e-61	AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109211.1	1e-105	PREDICTED: MADS-box protein AGL71-like
Refseq	XP_009109212.1	1e-105	PREDICTED: MADS-box protein AGL71-like
Refseq	XP_013656515.1	1e-105	MADS-box protein AGL71
Refseq	XP_018509436.1	1e-105	PREDICTED: MADS-box protein AGL71-like
Swissprot	Q9FLH5	1e-52	AGL72_ARATH; MADS-box protein AGL72
TrEMBL	A0A078ISC4	1e-104	A0A078ISC4_BRANA; BnaA08g30890D protein
STRING	XP_006413306.1	1e-104	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8805	12	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51860.2	4e-58	MIKC_MADS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]