PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g22650

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ZF-HD

Protein Properties

Length: 223aa MW: 24212.1 Da PI: 8.0714

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g22650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.8	1.3e-33	46	100	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eClkNhA+++GghavDGC+Efmps geeg+ +alkCaACgCHRnFHR+e+e Tp7g22650 46 KIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEEGSLDALKCAACGCHRNFHRKETE 100 689***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.2E-30	47	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-26	47	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-29	48	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.524	49	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-32	147	222	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.86E-20	148	221	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-27	161	217	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNFDEQEEEM EISGVNPPGG YDSLSGEGAT SSGGGGGGGR KSVGGKIRYR ECLKNHAVNI 60 GGHAVDGCCE FMPSGEEGSL DALKCAACGC HRNFHRKETE MIGGRAHRVP TYYNRPPQLP 120 PPGYLHLTTP GTAGQPYRPP AASADEEDTS NPSSSGGTTA KRFRTKFTAE QKEKMLAFAE 180 RLGWRIQKHD DMAVEQFCAE TGVRRQVLKI WMHNNKNSLG KKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-37	159	218	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g22650

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353261	0.0	AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138327.1	1e-133	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9SB61	1e-123	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1J3FZZ7	1e-134	A0A1J3FZZ7_NOCCA; Zinc-finger homeodomain protein 2 (Fragment)
TrEMBL	A0A1J3GDW6	1e-134	A0A1J3GDW6_NOCCA; Zinc-finger homeodomain protein 2 (Fragment)
STRING	Bra013822.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-123	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]