PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 253aa    MW: 28695.8 Da    PI: 9.3076
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.51.9e-352177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprC+s+ntkfCyynnyslsqPry Ck+CrryWt+GGalrn+P+Gg+ r+ k++
  Tp7g19080 21 PRVCPRCNSDNTKFCYYNNYSLSQPRYSCKNCRRYWTHGGALRNIPIGGSGRRTKRA 77
               678**********************************************99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027012.9E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.9412276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MENLSVLVRG GHQMNEEKPP PRVCPRCNSD NTKFCYYNNY SLSQPRYSCK NCRRYWTHGG  60
ALRNIPIGGS GRRTKRARIE QPSVSQLVSV EIQQVNHHQP FLHVQETNEF VGSFDGSSSS  120
SALFVGNHFG SLPETHGDMV LPIRSFPPMD LFDFSNGPFH KGYYDVGSND LVGNPLVNQS  180
IAEYVNNYNS YRINQEAQNK RNQSFNNTMN MNHNASTSGS RGYSGTDHMS KNNNKVRNKC  240
MFRSSYQLEK HGL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728782e-84AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410202e-84AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647345.11e-138dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-82DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5ZK041e-136A0A3P5ZK04_BRACM; Uncharacterized protein
STRINGBra013493.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-82Dof-type zinc finger domain-containing protein