PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g18450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family FAR1
Protein Properties Length: 752aa    MW: 87092.6 Da    PI: 5.8729
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g18450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.39.7e-2735135188
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g++++e+ +             +++ r +r++++t+Cka+l+vk+++dg+w++ +l +eHnH
  Tp7g18450  35 EFYKEYAKSVGFNTIIKASRRSRMTGKFIDAKFVCTRYGSKKTEEGEdidnglstegcqaRKRGRINRSSSKTDCKACLHVKRRQDGRWVIRTLIKEHNH 134
                6****************************************9999999*********998889999********************************** PP

       FAR1  88 e 88 
                e
  Tp7g18450 135 E 135
                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2435135IPR004330FAR1 DNA binding domain
PfamPF105511.2E-21226317IPR018289MULE transposase domain
PROSITE profilePS5096610.076509545IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-4520542IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-5520547IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MGIDLEMPSG ECSDQMINLG INEGIEFESK EEAFEFYKEY AKSVGFNTII KASRRSRMTG  60
KFIDAKFVCT RYGSKKTEEG EDIDNGLSTE GCQARKRGRI NRSSSKTDCK ACLHVKRRQD  120
GRWVIRTLIK EHNHEKFPGQ ASSIRESVGQ EKLKKQSGAI VKEMKSRKPL ALEDGDVERL  180
LNFFTDMQVE NPFFFYAIDL SNEQSLRNVF WVDAKGRLDY TCFCDVVSID TTFIKNEYKL  240
PLVAFIGVNH HGQSLLLGSG LLLTDESRSG FVWLFRAWLK AMHGCQPRVI LTKHDQMLKE  300
AVSEALPSSR HCFYMWDTLG QMPEKLGHVM RQGKSFVDEI NEAIYGSCKS VEFEKNWWEV  360
MDRFRMRDNA WLLSLYEDRE YWVPVYMKGV SLAGMCTAQR LDSVNSVFDK YIQRKITLKA  420
FLDQYKTMIQ ERYEEEEKAE IETLYKQPGL KSPSPFGKQM VKIYTREMFK KFQVEVLGGV  480
ACHPKKESEE DGGNKRTFRV QDYEQNRAFV VMWNSESSEV VCSCRLFELK GFLCRHTMIV  540
LQMSGELTIP SQYVLKRWTK DAKIREAVES DQVDEDSTKA QRYMDLCIRS FKLSEEASLS  600
EESYSAVINV MSEAFRNCED TSNLIHNMEE SDLEVAQDPS RHEEHNNNSF DENVADTGQE  660
HSLHEVWKAT ALQEQRNQYS ILDDYLSAQQ MSHEMGQIDM MASNRNAYCT AHQNIHSLGQ  720
SITQERLYGT EQLSFRPEVM YERLQDMVKD LN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g18450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528390.0AK352839.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413913.10.0protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLE4MWE20.0E4MWE2_EUTHA; mRNA, clone: RTFL01-08-D24
STRINGXP_006413913.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1