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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp7g16960 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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| Family |
GRAS |
| Protein Properties |
Length: 532aa MW: 58566.5 Da PI: 5.9274 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp7g16960 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 403.9 | 1.6e-123 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
l+e+L+e A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+s++y+al++++ + e ++++ +++e++P+ kf++ +aN
Tp7g16960 155 LKEVLVEGARAVADGDFATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGSNIYRALKCNDPT---GRELMSYMGVLYEICPYWKFAYTAANA 251
5789*****************************************************************9...99999999******************* PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
aIlea++ge+++HiiDf+i qG Q++ L+q+La+Rp+gpp lR+Tgv++++s+ + l+ +ge+Lak+A+++gvpfef+ + + +++ e+L v++
Tp7g16960 252 AILEAMAGETKIHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDDSQSNyaRGGGLSLVGEKLAKMAQSCGVPFEFHD-AIMSGCKVQREHLGVDR 350
*************************************************999999999************************.7888999********** PP
GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
g a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a pr++++ri+ E+++++r+ivn++
Tp7g16960 351 GFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMI 450
**************************************************************************************************** PP
GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
ace++er+erhe l+kWr r+++aGF p+s++a a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
Tp7g16960 451 ACEETERVERHEVLGKWRVRMMMAGFMGWPVSTSAGFAASEMLKGYDKN-YKLGGREGALYLFWKRRPMATCSAWK 525
***********************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 532 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQVID SNGFSDTPSK ESFFTLESST ASGSLPSYDS 60
PSVSITSGRT PFSPQGSQSC ISDLHPSPEN VDGSPLSGVS SYVYDEAGVK SKIRELEVSL 120
LSGDPKVEEF SGFSPAAGKS WNFDELLALT PQLDLKEVLV EGARAVADGD FATACGFIDV 180
LEQMVSVSGS PIQRLGAYMA EGLRARLEGS GSNIYRALKC NDPTGRELMS YMGVLYEICP 240
YWKFAYTAAN AAILEAMAGE TKIHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD 300
SQSNYARGGG LSLVGEKLAK MAQSCGVPFE FHDAIMSGCK VQREHLGVDR GFAVVVNFPY 360
VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420
ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEETERVER HEVLGKWRVR MMMAGFMGWP 480
VSTSAGFAAS EMLKGYDKNY KLGGREGALY LFWKRRPMAT CSAWKPNPNR IV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |
