PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g16290
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 206aa    MW: 22495.7 Da    PI: 5.0431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g16290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-054668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  Tp7g16290 46 YTCNFCRREFRSAQALGGHMNVH 68
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.44E-74373No hitNo description
Gene3DG3DSA:3.30.160.609.2E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-54669IPR007087Zinc finger, C2H2
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGGAWMWNP SKVEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRATKAHQGP AAAVAARSGG GSGGGRTTFL GSCVPPTATL IIQSTASNIE  120
GLSHFYQSQN PNSMFSNSSD MMNFYGTTSS PSSNLDFSVL NSPVEVTPRL IEYSTGDDDS  180
ISSMKETTRT SVDEPDLELR LGHKPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g16290
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596098.11e-131PREDICTED: uncharacterized protein LOC106304236
RefseqXP_013646948.11e-131zinc finger protein 11-like
RefseqXP_013706190.11e-131zinc finger protein 11-like
TrEMBLA0A0D3DEQ11e-130A0A0D3DEQ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ER721e-130A0A3P6ER72_BRAOL; Uncharacterized protein
STRINGBo7g105490.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-103C2H2 family protein