PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g11070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 268aa    MW: 31127.2 Da    PI: 9.7783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g11070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
        Tp7g11070 15 KGPWTGEEDRLLIEYVRVHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 62
                     79******************************9*************97 PP
2Myb_DNA-binding52.61e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
        Tp7g11070  68 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5511062IPR017930Myb domain
SuperFamilySSF466898.24E-3013109IPR009057Homeodomain-like
SMARTSM007179.2E-161464IPR001005SANT/Myb domain
PfamPF002497.7E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231669IPR009057Homeodomain-like
CDDcd001673.08E-111762No hitNo description
PROSITE profilePS5129424.35863117IPR017930Myb domain
SMARTSM007173.9E-1567115IPR001005SANT/Myb domain
PfamPF002496.0E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2470116IPR009057Homeodomain-like
CDDcd001672.09E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSWWGVKEVA EAWRKGPWTG EEDRLLIEYV RVHGEGRWNS VARLTGLKRN GKSCRLRWVN  60
YLRPDLKRGQ ITPHEESIIL ELHAKWGNRW STIARSLPGR TDNEIKNYWR THFKKKTKPA  120
TNSAEKTKNL LLKRQQFKQQ RQMELQQEQQ LFQFDQLDMK KIMSLLEDNS SSSSSVGVDM  180
FYDSPQMIHS STASGNINPN SLEEQLQGRF APANIPETTT INEELSIWDR FWNLDTEDRN  240
GGNLGIVAAT APCGPRKHYF HNLVIPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g11070
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.21e-145transcription repressor MYB6
TrEMBLR0GP771e-144R0GP77_9BRAS; Uncharacterized protein
STRINGBostr.2021s0106.1.p1e-145(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-120myb domain protein 79