PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HB-other

Protein Properties

Length: 1464aa MW: 164997 Da PI: 7.944

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g09140	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.5	3e-10	5	53	8	56
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ql++Le+++ +++ p+ +e+e+L lgLt + V+ WF+ rR +k Tp7g09140 5 SPVQLQALEDFYLEKMFPTPKEMEDLGITLGLTVKEVSGWFKRRRSTRK 53 788******************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.483	1	55	IPR001356	Homeobox domain
SMART	SM00389	8.8E-7	1	59	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-9	3	54	IPR009057	Homeodomain-like
CDD	cd00086	3.62E-9	3	49	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-9	3	54	IPR009057	Homeodomain-like
Pfam	PF00046	6.7E-8	5	53	IPR001356	Homeobox domain
SMART	SM00571	4.5E-9	308	367	IPR018501	DDT domain
PROSITE profile	PS50827	12.115	308	367	IPR018501	DDT domain
Pfam	PF02791	1.4E-8	309	362	IPR018501	DDT domain
Pfam	PF15612	9.8E-7	588	627	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-10	709	782	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1464 aa Download sequence Send to blast
MKRKSPVQLQ ALEDFYLEKM FPTPKEMEDL GITLGLTVKE VSGWFKRRRS TRKSGKFLPN 60 GAVGAKNPQS YNSSSMRSST STRCDFGAAV EKRCSVGTRK ASCQKLLTSQ HILAKIFRKD 120 GPSLGYEFDH LPCGARKASW LGSSSVDQQK QRVARKRKIS ELMDHTSQDC VEKNASVKKH 180 GIGKELMTAW RKQKLLQKRS AEKKRCSINR EVEVNKDETQ RAFKEKCELA VDGEIFKETC 240 QTISILVDDE ELEMRERQEG ENPLTCSCHI TSSGSHGCFL CKDLLPKFPP NSVQMRLPFG 300 LHPWNSSPES VKKLFKVVHF LYTYSVTLDI CPFTIDEFTR AFHDKDSLLL GKIHLSLLKL 360 LLLNVETELQ SGSFSNLSIS CKFLALLQSV ESQILILDLW KESLNSLTWT EILRQILVAA 420 GFGSLKSAGQ SEELSKERKL MKKYGLRLGT LKGELFRILN EQGNNGLKIS ELANAEEVAA 480 LNLATASEER EHSICSTLAS DITLFEKISE STYRVRVNCF SEDPDKGQSD SDESGSVDDE 540 SDDCSFSSGD ENKRVSENLA LRKVKCRKRR KHKSNMLEVC SEIDESHPGE PWLLGLMEGE 600 YSDLSIEEKL DVFVALIDLL SSASTIRKED LPRAMVDCVP SIYSHGSGGK IKRSSSNQYS 660 YPRVSWVHGG ERVEELSKSS DSHPVDSSSV VGAFAQLAGH KANNVHPMQS IYLGSDRRFN 720 RYWLFLGPCN VNDPGHRCVY FESSEDGHWE VISNKEAFRA LLSVLDDRGR REARLIESLE 780 KRETFLCQAM LSRIDHFTDV IREDSSSPVS DIENNLCLNE IASVQFSSQH AAIVFEIGSK 840 REKSLLWSLL QEFDEWIWAN FYLNLNAVKH SRRSYLDSLT RCKSCHDLYW RDEKHCKICH 900 ATFELDIDLE ERYAIHVATC KKNEESDRFP DHKVLSSQLQ SLKAAVYAIE SAMPEDALIG 960 AWKKSAHRLW AKRLRRSSTL SEITQVIGDF VGAMNEDWLW HFGDEEHSNA LMGEVITSLP 1020 SMPQTTSAIA LWLVKLDTLI APYVEKAQPE RNQLCRTRNT SERLSSSCSS QLDIMEGHSS 1080 LPQNCSQNSL EIGQGREIAV ATDPEIPGNC FRISQKRLPT DAPITVSAAI IGPNKFLGRP 1140 AITWSDRSNP RSTEFRQGRL KNPLGRNFVT QHPEIHGLKN ASLKQKPSKF NIYSFYADLQ 1200 TIGAVCEDLR FIKRTKHMAG TEPTIEMIPP KAPPLASIRG KPVMGESSAP QTKSLQETPG 1260 RVVDQRYDIA INAGRSMIRC SKGVCGRDEV SHTEREGWSA SWLILSSKSA GFPLRSPRLG 1320 VGLARVRGAS HRGRTRLGRA WMDFDQLSIQ SDPWSIGLDQ NGLDVDLVER NRMSVHEMYR 1380 MRCGPLWVRK PGRPACLLDH LPNWACPECK CPDPSDLLGH LVDEKRFLVW VFGWSDVLGI 1440 GRVERYGRGE LFQDALDAKV VLMV

Sequence ? help Back to Top

Protein Sequence Length: 1464 aa Download sequence Send to blast

MKRKSPVQLQ ALEDFYLEKM FPTPKEMEDL GITLGLTVKE VSGWFKRRRS TRKSGKFLPN  60
GAVGAKNPQS YNSSSMRSST STRCDFGAAV EKRCSVGTRK ASCQKLLTSQ HILAKIFRKD  120
GPSLGYEFDH LPCGARKASW LGSSSVDQQK QRVARKRKIS ELMDHTSQDC VEKNASVKKH  180
GIGKELMTAW RKQKLLQKRS AEKKRCSINR EVEVNKDETQ RAFKEKCELA VDGEIFKETC  240
QTISILVDDE ELEMRERQEG ENPLTCSCHI TSSGSHGCFL CKDLLPKFPP NSVQMRLPFG  300
LHPWNSSPES VKKLFKVVHF LYTYSVTLDI CPFTIDEFTR AFHDKDSLLL GKIHLSLLKL  360
LLLNVETELQ SGSFSNLSIS CKFLALLQSV ESQILILDLW KESLNSLTWT EILRQILVAA  420
GFGSLKSAGQ SEELSKERKL MKKYGLRLGT LKGELFRILN EQGNNGLKIS ELANAEEVAA  480
LNLATASEER EHSICSTLAS DITLFEKISE STYRVRVNCF SEDPDKGQSD SDESGSVDDE  540
SDDCSFSSGD ENKRVSENLA LRKVKCRKRR KHKSNMLEVC SEIDESHPGE PWLLGLMEGE  600
YSDLSIEEKL DVFVALIDLL SSASTIRKED LPRAMVDCVP SIYSHGSGGK IKRSSSNQYS  660
YPRVSWVHGG ERVEELSKSS DSHPVDSSSV VGAFAQLAGH KANNVHPMQS IYLGSDRRFN  720
RYWLFLGPCN VNDPGHRCVY FESSEDGHWE VISNKEAFRA LLSVLDDRGR REARLIESLE  780
KRETFLCQAM LSRIDHFTDV IREDSSSPVS DIENNLCLNE IASVQFSSQH AAIVFEIGSK  840
REKSLLWSLL QEFDEWIWAN FYLNLNAVKH SRRSYLDSLT RCKSCHDLYW RDEKHCKICH  900
ATFELDIDLE ERYAIHVATC KKNEESDRFP DHKVLSSQLQ SLKAAVYAIE SAMPEDALIG  960
AWKKSAHRLW AKRLRRSSTL SEITQVIGDF VGAMNEDWLW HFGDEEHSNA LMGEVITSLP  1020
SMPQTTSAIA LWLVKLDTLI APYVEKAQPE RNQLCRTRNT SERLSSSCSS QLDIMEGHSS  1080
LPQNCSQNSL EIGQGREIAV ATDPEIPGNC FRISQKRLPT DAPITVSAAI IGPNKFLGRP  1140
AITWSDRSNP RSTEFRQGRL KNPLGRNFVT QHPEIHGLKN ASLKQKPSKF NIYSFYADLQ  1200
TIGAVCEDLR FIKRTKHMAG TEPTIEMIPP KAPPLASIRG KPVMGESSAP QTKSLQETPG  1260
RVVDQRYDIA INAGRSMIRC SKGVCGRDEV SHTEREGWSA SWLILSSKSA GFPLRSPRLG  1320
VGLARVRGAS HRGRTRLGRA WMDFDQLSIQ SDPWSIGLDQ NGLDVDLVER NRMSVHEMYR  1380
MRCGPLWVRK PGRPACLLDH LPNWACPECK CPDPSDLLGH LVDEKRFLVW VFGWSDVLGI  1440
GRVERYGRGE LFQDALDAKV VLMV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g09140

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049640	0.0	AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBank	AL161534	0.0	AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005576.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	V4MLN1	0.0	V4MLN1_EUTSA; Uncharacterized protein
STRING	XP_006415009.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator