PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TALE

Protein Properties

Length: 587aa MW: 66553.3 Da PI: 7.1532

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g00540	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.2	6.4e-09	391	428	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Tp7g00540 391 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 428 554459******************************88 PP
2	BELL	103.2	1.8e-33	249	320	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLl +lee+++rY +y+eq++ +++Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi Tp7g00540 249 EFMELQKRKAKLLAMLEELKRRYGHYREQMRLAAGAFEAAVGIGAAEMYTALASRAMSRHFRCLKDGLVGQI 320 679*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	3.3E-41	177	316	IPR006563	POX domain
SMART	SM00574	9.7E-65	183	318	IPR006563	POX domain
PROSITE profile	PS50071	12.017	369	432	IPR001356	Homeobox domain
CDD	cd00086	1.59E-10	372	433	No hit	No description
SMART	SM00389	5.6E-9	372	436	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-17	373	439	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-28	375	439	IPR009057	Homeodomain-like
Pfam	PF05920	7.7E-18	389	428	IPR008422	Homeobox KN domain
CDD	cd00102	0.00354	465	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MINQIPGFDG TNQNPNVHHH QQQHHYNHQI FGSNSNMGMM IDFSKQHEIR MTSGMDHHHH 60 HHHQTSGGTD QNQLLEDSSS SMRLCNVNNN FSSEVNDERP PQRPSQGLSL SLSSSNPTSI 120 SLQSFDLRPQ QQQLQGYSGK STHHQNLPHS QMMLMMMNSQ QQNNTSNLHH HHHQFQIGSS 180 KFLSPAQELL SDFCSLGVKE SDDEVMMMKH KRKQKGKQQE EWDTSNNDQQ DQSATTSSKK 240 HVPPLHSLEF MELQKRKAKL LAMLEELKRR YGHYREQMRL AAGAFEAAVG IGAAEMYTAL 300 ASRAMSRHFR CLKDGLVGQI QATSQALGER DDDNRGVSIA ARGETPRLRL LDQALRQQKS 360 YRQMSLVEAH PWRPQRGLPE RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN 420 WFINARVRLW KPMIEEMYCE ETRGEEQQME ITNPMFIDTK PDPNQIMRVE PESLSAIVTK 480 TGHKDNSNQQ GTVSFGSTFD FSSYGGNQAV TYTGEGGTRD VSLTLGLQNG GVSLALSPVT 540 AQVGPLYYGR DHIEGSVQYQ PSMLDDDQAQ NLPYRNLMGA QLLHDMV

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MINQIPGFDG TNQNPNVHHH QQQHHYNHQI FGSNSNMGMM IDFSKQHEIR MTSGMDHHHH  60
HHHQTSGGTD QNQLLEDSSS SMRLCNVNNN FSSEVNDERP PQRPSQGLSL SLSSSNPTSI  120
SLQSFDLRPQ QQQLQGYSGK STHHQNLPHS QMMLMMMNSQ QQNNTSNLHH HHHQFQIGSS  180
KFLSPAQELL SDFCSLGVKE SDDEVMMMKH KRKQKGKQQE EWDTSNNDQQ DQSATTSSKK  240
HVPPLHSLEF MELQKRKAKL LAMLEELKRR YGHYREQMRL AAGAFEAAVG IGAAEMYTAL  300
ASRAMSRHFR CLKDGLVGQI QATSQALGER DDDNRGVSIA ARGETPRLRL LDQALRQQKS  360
YRQMSLVEAH PWRPQRGLPE RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN  420
WFINARVRLW KPMIEEMYCE ETRGEEQQME ITNPMFIDTK PDPNQIMRVE PESLSAIVTK  480
TGHKDNSNQQ GTVSFGSTFD FSSYGGNQAV TYTGEGGTRD VSLTLGLQNG GVSLALSPVT  540
AQVGPLYYGR DHIEGSVQYQ PSMLDDDQAQ NLPYRNLMGA QLLHDMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-15	378	436	5	63	Homeobox protein Meis2
3k2a_B	3e-15	378	436	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g00540

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352866	0.0	AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637027.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	0.0	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A3P6CG88	0.0	A0A3P6CG88_BRAOL; Uncharacterized protein
STRING	Bo4g142080.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	0.0	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]