PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g00200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 405aa    MW: 44859.8 Da    PI: 4.9549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g00200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.4e-112454002374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lLl+cAe v++++l++a++lL+++se++sp +++ +R++ayf++AL+ar+ +  s l++a ++   +  +s++ +aal++f+ vsP++kfsh+taNqa
  Tp7g00200  45 LSLLLQCAEYVATDHLREASTLLSEISEICSPFDSSPERVVAYFAQALQARVIS--SYLSAASETPLLTVFQSQKIFAALQTFNSVSPLIKFSHFTANQA 142
                689***************************************************..5555555555555567999999********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                I +a+++++ vHiiD+d++qGlQWp L++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++l +pfef+++  k  + +++++L ++pgEa
  Tp7g00200 143 IFQALDTDDSVHIIDLDVMQGLQWPGLFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFAASLSLPFEFHPIEGKIGNLIDPSQLGTRPGEA 238
                ************************************************....9**************************988888899************ PP

       GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                ++V+++   hrl+d ++s  +    +L+++++l+P+++++veqe+++  +++ Fl rf+eal+yysalfd+l  +l++es er +vE+++l+ ei+n+v 
  Tp7g00200 239 VVVHWMQ--HRLYDVTGSDLD----TLEIIRRLKPNLITMVEQELSYddGGSCFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQVVLATEIRNIVG 332
                ******9..****99999999....*******************998657789**********************************************8 PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + ++       +++W+e l+++GF++v+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
  Tp7g00200 333 GKRRR-------MMRWKEELSRVGFRSVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 400
                77665.......889***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.9118380IPR005202Transcription factor GRAS
PfamPF035143.3E-10945400IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTAKRLDRGY PSSGDLSSVK RHKDLDFPDE TTPEDDDDGG AINLLSLLLQ CAEYVATDHL  60
REASTLLSEI SEICSPFDSS PERVVAYFAQ ALQARVISSY LSAASETPLL TVFQSQKIFA  120
ALQTFNSVSP LIKFSHFTAN QAIFQALDTD DSVHIIDLDV MQGLQWPGLF HILASRPRKL  180
RSIRITGFGS SSDLLASTGR RLADFAASLS LPFEFHPIEG KIGNLIDPSQ LGTRPGEAVV  240
VHWMQHRLYD VTGSDLDTLE IIRRLKPNLI TMVEQELSYD DGGSCFLGRF VEALHYYSAL  300
FDALGDGLGE ESGERFTVEQ VVLATEIRNI VGGKRRRMMR WKEELSRVGF RSVSLRGNPA  360
TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWQ SQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-141283992377Protein SCARECROW
5b3h_D1e-141283992377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g00200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533820.0AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405294.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1J3HSI80.0A0A1J3HSI8_NOCCA; Scarecrow-like protein 23
STRINGXP_006405294.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]