 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp6g41150 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
WRKY |
| Protein Properties |
Length: 261aa MW: 30246.4 Da PI: 6.7624 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g41150 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 73.5 | 2.8e-23 | 109 | 169 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+Dg+ WrKYGqK++k+s++ rsYY+C+++ +C++kk+v+ +++p + +tY g+H+++
Tp6g41150 109 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQMIQDNPPLYSTTYFGHHTCQ 169
6**************************988899**************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MKSCQQKAME TLLHGHGCAN KLKLIMESDS SMEREDLAKS VLHCFSDALS ILIDTSDHQQ 60
EDQSNISSPQ DSSPVLESSR KLLHKRGRKT SMAESSDYRR HESPNPIYHD GFLWRKYGQK 120
QIKESDHQRS YYKCAYTKDQ NCEAKKQVQM IQDNPPLYST TYFGHHTCQL HQAYATFPID 180
TSDPQDSHMI RFDHPNSSTH QHQHQHQNQN QNQIIHLKDE HMMSPERVEE WSSPSQWMSS 240
EVAHAVEAFG FNPFRTSSDL S
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF430069 | 0.0 | KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds. |
