PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 27214.8 Da PI: 9.2155

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g38940	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	78	130	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Tp6g38940 78 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 130 45699***********************************************9 PP
2	HD-ZIP_I/II	116.5	1.5e-37	77	167	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ lk Tp6g38940 77 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDIVSREKQMLHEEVKKLRAILK 167 9**************************************************************************************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	67	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-19	71	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	72	132	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	74	136	IPR001356	Homeobox domain
CDD	cd00086	6.98E-15	77	133	No hit	No description
Pfam	PF00046	4.4E-16	78	130	IPR001356	Homeobox domain
PRINTS	PR00031	4.2E-5	103	112	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	112	128	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEWSMTSNVD NVRVAFVPPP WPESTSFNSL HSFNFDPYAG NSYTPVERQT GPVISVLESE 60 KIINAYRFPS NNNEMIKKKR LTSGQLASLE RSFQEEIKLD SDRKVKLSRE LGLQPRQIAV 120 WFQNRRARWK AKQLEQLYDS LRQEYDIVSR EKQMLHEEVK KLRAILKDQG LIKKQISGET 180 PKVSGGEDTT EIPSVVIAHP RTENLNANQI SGENKIYGSD QYNNPMVVAS SCWPPYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g38940

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005235	1e-130	AB005235.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MED24.
GenBank	AC232522	1e-130	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
GenBank	AL162506	1e-130	AL162506.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project).
GenBank	CP002688	1e-130	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195999.2	1e-151	homeobox 51
Swissprot	Q9LZR0	1e-152	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	V4LKE4	1e-151	V4LKE4_EUTSA; Uncharacterized protein
STRING	XP_006398835.1	1e-152	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-155	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]