 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp6g36810 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
MYB |
| Protein Properties |
Length: 486aa MW: 53780.1 Da PI: 5.329 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g36810 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+ Ed++l+d+v ++G g+W+++ ++ g+ R++k+c++rw ++l
Tp6g36810 33 KGPWSSAEDDILIDYVMKHGEGNWNAVQKHTGLFRCGKSCRLRWANHL 80
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++++eE++l+v++++++G++ W++ a++++ gRt++++k++w++
Tp6g36810 86 KGAFSQEEEQLIVELHAKMGNR-WARMAAHLP-GRTDNEIKNYWNT 129
799*******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 486 aa
Download sequence Send
to blast |
MSYVSTESDH NESPFTDNGS DCRSRWEGNA LKKGPWSSAE DDILIDYVMK HGEGNWNAVQ 60
KHTGLFRCGK SCRLRWANHL RPNLKKGAFS QEEEQLIVEL HAKMGNRWAR MAAHLPGRTD 120
NEIKNYWNTR IKRRQRAGLP LYPPEMHVEV LDWNQEYTTS RILGGDRRQQ DFLQLGGCES 180
NVFFDSLDFV TDIVPGGPSD LACKILRNGG TSPRYGNFMP PIMPSSKRLR GSESLYPGCS 240
STIKEESLSP EHFQNTAQQK ISTTCSFSVP CDSDPPYGNQ RSPVMIPDCH TLTDGLVPTS 300
NPSFGAVKLE LPSFQYSEAT FDQWKKSASP PHSELLDPFD AYIQSPPPTG RKESDFFSSY 360
DTGLLDMLLL EAKFRNNSTK NSLSCTSATP SADVGEVNVS QIKSEEFHDS PNSLVPSEIS 420
ISAQHNADGV PLRIVKETGS MSEALAVLLG DDIGNDYMQM SVGGSSGVGS CAWSNMPPVC 480
QMTELP
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB65 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Binds to a GARE site (GA-response element) in the LEAFY promoter, essential for its gibberellic acid (GA)-mediated induction (PubMed:15226253). Together with MYB65, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates at the shoot apex upon the transition from short- to long-day photoperiods leading to flowering and after gibberellins (GAs) treatment (PubMed:11743113). Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:15226253, PubMed:20699403, PubMed:17916625). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Repressed in germinating seeds by miR159-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:17217461, PubMed:18305205). Slightly induced by ethylene and cytokinins (PubMed:9839469). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:18305205, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:9839469}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Allen RS, et al.
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(41): p. 16371-6
[PMID:17916625] - Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
PLoS ONE, 2013. 8(7): p. e67987
[PMID:23976921] - Li J,Reichel M,Millar AA
Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis.
PLoS Genet., 2014. 10(3): p. e1004232
[PMID:24626050] - Li Y,Alonso-Peral M,Wong G,Wang MB,Millar AA
Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses.
BMC Plant Biol., 2016. 16(1): p. 179
[PMID:27542984] - Liu B,De Storme N,Geelen D
Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis.
Plant Physiol., 2017. 173(1): p. 338-353
[PMID:27621423] - Zhang F, et al.
Phosphorylation of CBP20 Links MicroRNA to Root Growth in the Ethylene Response.
PLoS Genet., 2016. 12(11): p. e1006437
[PMID:27870849] - Zheng Z, et al.
Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
Plant Physiol., 2017. 174(3): p. 1764-1778
[PMID:28515145] - Guo C, et al.
Repression of miR156 by miR159 Regulates the Timing of the Juvenile-to-Adult Transition in Arabidopsis.
Plant Cell, 2017. 29(6): p. 1293-1304
[PMID:28536099] - Xue T,Liu Z,Dai X,Xiang F
Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
Plant Sci., 2017. 262: p. 182-189
[PMID:28716415] - Medina C, et al.
Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita.
New Phytol., 2017. 216(3): p. 882-896
[PMID:28906559] - Kim MH, et al.
Poplar MYB transcription factor PtrMYB012 and its Arabidopsis AtGAMYB orthologs are differentially repressed by the Arabidopsis miR159 family.
Tree Physiol., 2018. 38(6): p. 801-812
[PMID:29301041]
|
