PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g36800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 667aa    MW: 75980.1 Da    PI: 8.0972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g36800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08478518239
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                      ++W++eE + l ++v+++++g   +W+ I++++g+gR+  +
        Tp6g36800 478 KPWSKEETDMLRKGVTKFPKGtsgRWEVISEYIGTGRSVDE 518
                      69**********************************99765 PP
2Myb_DNA-binding27.86e-09611656447
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ ++
        Tp6g36800 611 WSAVQERALVQALKTFPKDtnqRWERVATAVP-GKTMNQCKKKFADL 656
                      ********************************.*********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.5E-2073182IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.4E-19100203IPR001623DnaJ domain
SMARTSM002717.1E-15103178IPR001623DnaJ domain
PfamPF002267.1E-17104183IPR001623DnaJ domain
PROSITE profilePS5007617.634104186IPR001623DnaJ domain
CDDcd062576.80E-13104175IPR001623DnaJ domain
PRINTSPR006252.1E-7109127IPR001623DnaJ domain
PRINTSPR006252.1E-7127142IPR001623DnaJ domain
PRINTSPR006252.1E-7158178IPR001623DnaJ domain
PROSITE patternPS006360163182IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.62472515IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-6473519IPR009057Homeodomain-like
SMARTSM007173.8E-6476529IPR001005SANT/Myb domain
PfamPF002491.7E-6478519IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7478521IPR009057Homeodomain-like
CDDcd001675.80E-4479519No hitNo description
SMARTSM007174.1E-8607659IPR001005SANT/Myb domain
SuperFamilySSF466893.89E-9609663IPR009057Homeodomain-like
PROSITE profilePS500907.12611657IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-5611655IPR009057Homeodomain-like
PfamPF002491.6E-7611656IPR001005SANT/Myb domain
CDDcd001673.41E-6611657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MQSWGINSDI KLLAYSDELL DGQPLYASSN CLPVKALNRE PAGHAFHSAA LKLRGCAKEA  60
TDNKEDTSDK KVADEKDKEY IPSYDSYNNN NKGKKKKSGK EQHDHYALLG LGNLRYLATE  120
DQIRKSYREA ALKHHPDKLA TLLLAEETEE AKQAKKDAIE SHFKLIQEAY EVLMDPTKRR  180
IFDSTDEFDD EVPSDCAPKD FFKVFGPAFK RNARWSVNSR VPDLGDENTP VRDVDSYYNF  240
WYAFKSWREF PEEEEHDLEQ AESREEKRWM ERENAKKTQK ARKEEYARIR TLVDNAYKKD  300
PRILKRKEDE KAKKQQKKDA KVLAKKKLEE EAAAAIEEEK RRKEEEAKRA AEAAQQQKRV  360
KEKEKKLLRK ERSRLRTLSA PVLSQRLLGI SVEHVEDLCM SLNTEQLRNL CDKMESREGL  420
NLAKVLKNGN SSNDDETESK NDETESKEEV VQVAAKQNGH VEANGFSMID SATQKKEKPW  480
SKEETDMLRK GVTKFPKGTS GRWEVISEYI GTGRSVDEIL KATKTVLLQK PDSAKAFDSF  540
LEKRKPAASI ASPLSTREEL GEPIIPTKPI EDNNSTKTET TEQSSGKSEE NNNNQDNSEP  600
VAAAGSDPDG WSAVQERALV QALKTFPKDT NQRWERVATA VPGKTMNQCK KKFADLKDVI  660
RSKKPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1520030320123Zuotin
5dje_B5e-1520030320123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324342KKKLEEEAAAAIEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g36800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399072.10.0dnaJ homolog subfamily C member 2
TrEMBLV4KRI40.0V4KRI4_EUTSA; Uncharacterized protein
STRINGXP_006399072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain