PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 37679.1 Da PI: 9.4106

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g36150	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.2e-18	189	243	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Tp6g36150 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 243 678899***********************************************98 PP
2	HD-ZIP_I/II	129.1	1.8e-41	189	279	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LE+sF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk Tp6g36150 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 279 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-18	181	246	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	185	245	IPR001356	Homeobox domain
SMART	SM00389	4.4E-16	187	249	IPR001356	Homeobox domain
CDD	cd00086	1.28E-15	189	246	No hit	No description
Pfam	PF00046	2.6E-15	189	243	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-17	189	243	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	220	243	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00853	238	277	No hit	No description
Pfam	PF02183	2.8E-11	245	279	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.3E-26	245	288	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MELALCLGEN TNKFSFLEKP SKISNNPSAS STSTSDKDLG FNIGLDVLGF GGHRSLSSSS 60 SPSVEDEKKK KNKRKLAPRA NDSDGFRVSS SLDPSLQLQL HFPWLPENSR QGGRMLSGAA 120 TVPEEEEEAA PSMSVSPPDS VTSSFRLNFG IKSYGYERRS NKRDIDDEVE RSASRASNED 180 NDDENGTTRK KLRLSKDQSA FLEDSFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA 240 RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFYMQLPA TTLTMCPSCE 300 RVASQPSTSS AHNIGLSNKS SFQSHLLPVK PGPAKQVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	75	EKKKKNKRKL
2	68	75	KKKNKRKL
3	187	193	TRKKLRL
4	237	245	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g36150

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442295.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT14
Swissprot	P46665	0.0	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0D3EH95	0.0	A0A0D3EH95_BRAOL; Uncharacterized protein
STRING	Bo9g175900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4928	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-149	homeobox from Arabidopsis thaliana