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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g36020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 457aa MW: 50759.1 Da PI: 6.9903 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 159 | 187 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Tp6g36020 159 KTLRRLAQNREAARKSRLRKKAYVQQLES 187 7789***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-9 | 148 | 203 | No hit | No description |
SMART | SM00338 | 4.5E-7 | 155 | 243 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.737 | 157 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.5E-8 | 159 | 189 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.01E-7 | 159 | 200 | No hit | No description |
CDD | cd14708 | 9.25E-23 | 159 | 211 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 162 | 177 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.8E-30 | 252 | 326 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MQGHHQNHHQ QLSSASATSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PPSTAPLPHH 60 HTTQNLAMRP PTSTLNIFPS QPMHIEPPLS SSTPNTDNTS LVPAAAPSGS SRPSSEPSMD 120 LTNHSQFQLP QPSKSIKKEG NRKGPSSSDH DIPKSSDPKT LRRLAQNREA ARKSRLRKKA 180 YVQQLESCRI KLTQLEQEIQ RARSQGVFFG GSLIGGDQQQ GGMSIGPGNV SSEAAVFDME 240 YTRWMEEQQR LLTELRVATQ EHLAENELRM FVDTCLAHYD HLINLKAMVA KTDVFHLISG 300 AWKTPAERCF LWMGGFRPSE IIKVIVNQIE PLTEQQIVGI CGLQQSTQEA EEALSQGLEA 360 LNQSLSDSIV SDSLSPASSQ LPPHLSNFMS HMSLALNKLS ALEGFVLQAD NLRHQTIHRL 420 NQLLTTRQEA RCILAVAEYF HRLQALSSLW LARPRQD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g36020 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ132742 | 0.0 | HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399160.2 | 0.0 | transcription factor TGA10 | ||||
Swissprot | E3VNM4 | 0.0 | TGA10_ARATH; Transcription factor TGA10 | ||||
TrEMBL | A0A1J3I3I6 | 0.0 | A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1) | ||||
STRING | Bo9g175780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7207 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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