 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp6g35360 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
C3H |
| Protein Properties |
Length: 246aa MW: 28111.4 Da PI: 6.827 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g35360 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 22.7 | 1.8e-07 | 98 | 117 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26
C+ f+ G C++Gd C FaHg
Tp6g35360 98 CPAFRN-GACHRGDACEFAHG 117
666666.*************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MLKSINSMTF YEIGDHQFPT LGYIVSKPGN TGAYEMDPPI PTVDDAIYGS DEFRMYAYKI 60
KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD ACEFAHGVFE 120
YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTAARGGDGD 180
GVGTRLDGDD IDTWTSPVKS GKSDLDINEE RVLKCWSGMS IVDDHYEPSD FDLDLSHIDW 240
ISELVD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY350711 | 0.0 | AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence. |
