![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp6g33370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 364aa MW: 41698.2 Da PI: 7.7048 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37 | 7.4e-12 | 78 | 110 | 3 | 35 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ Tp6g33370 78 PDKTQRRLAQNREAARKSRLRKKAYVQQLETSR 110 689**************************9854 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.1E-6 | 76 | 139 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.76 | 78 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.8E-9 | 78 | 108 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-7 | 80 | 121 | No hit | No description |
SuperFamily | SSF57959 | 2.88E-7 | 80 | 115 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.7E-30 | 166 | 241 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MNTTSTHFVP PRRFEIYEPL SQISMWEESF KNNGGIYTPN SIIVPTNGKQ DSLSEDTSHG 60 TEGTPHKFDQ EASTSRHPDK TQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIHLEQEL 120 DRARQQGFYA GNQVDTNALG FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLQGQVSD 180 VELRLLVDNA MKHYFQLFRM KSAAAKIDVF YIMSGMWKTS AERFFLWIGG FRPSELLKVL 240 LPHFDPLMDQ QVLDVCNLRQ SCQQAEDAVS QGMEKLQHTL AESVAAGKLG EGSYVPQITC 300 AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWATRQ 360 REPT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp6g33370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353085 | 0.0 | AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190270.1 | 0.0 | TGACG motif-binding factor 4 | ||||
Refseq | NP_001330616.1 | 0.0 | TGACG motif-binding factor 4 | ||||
Refseq | NP_001330617.1 | 0.0 | TGACG motif-binding factor 4 | ||||
Refseq | NP_001330618.1 | 0.0 | TGACG motif-binding factor 4 | ||||
Refseq | NP_196565.1 | 0.0 | TGACG motif-binding factor 4 | ||||
Swissprot | Q39162 | 0.0 | TGA4_ARATH; Transcription factor TGA4 | ||||
TrEMBL | Q24JJ3 | 0.0 | Q24JJ3_ARATH; At5g10030 | ||||
STRING | AT5G10030.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10030.2 | 0.0 | TGACG motif-binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|