PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g32450

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 1546aa MW: 170599 Da PI: 6.7749

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g32450	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.1e-17	1223	1269	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++v+q+G + W+ I++ + gR +kqc++rw+++l Tp6g32450 1223 KGQWTAEEDRKLIKLVRQHGERKWAMISENLE-GRAGKQCRERWHNHL 1269 799***************************.***********97 PP
2	Myb_DNA-binding	47.3	4.8e-15	1275	1317	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++e++++lv+a+ + G++ W+ Ia+ ++ gRt++++k++w+ Tp6g32450 1275 KDCWSEEDEKILVEAHIRIGNK-WAEIAQIIQ-GRTENSIKNHWN 1317 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08626	7.4E-19	12	196	IPR013935	TRAPP II complex, Trs120
Pfam	PF08626	3.0E-11	203	271	IPR013935	TRAPP II complex, Trs120
Pfam	PF08626	1.2E-32	329	744	IPR013935	TRAPP II complex, Trs120
PROSITE profile	PS51294	28.796	1218	1273	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-26	1221	1316	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-16	1222	1271	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-25	1224	1277	IPR009057	Homeodomain-like
CDD	cd00167	3.63E-15	1226	1269	No hit	No description
Pfam	PF13921	4.3E-17	1226	1283	No hit	No description
PROSITE profile	PS51294	18.149	1274	1324	IPR017930	Myb domain
SMART	SM00717	6.3E-13	1274	1322	IPR001005	SANT/Myb domain
CDD	cd00167	1.02E-9	1278	1320	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-16	1278	1322	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000919	Biological Process	cell plate assembly
GO:0005769	Cellular Component	early endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1546 aa Download sequence Send to blast
MEPDVSIETL SIIRIAVLPI GTIPPALLRD YHSMLLRHHT IALSAISSFY TEHQKSPFTN 60 QPWDSGSLRF KFVLGGSPPS PWEDFQSNRK ILAVIGLCHC PSSPDLISVT EKFNVACKSY 120 SSALVRRCFA FCPGDSQLED GDKKGENLIL FPPSDKQTQE FHLQTMMQDI AASLLMEFEK 180 WVLQAESAGT ILKTPLDSQA SLNSEEVIKA KKRRLGRAQK TIGDYSLLAG SPVDANAHYS 240 TALELARLTG DYFWYAGALE GSVCALLVDR MGQQDVALED EVRYRYTNVI LHYRKSFIQE 300 IAQRVSPLSF ELEATLKLAR FLCRRELAKE VVELLTNAAD GAKSLIDVSD RLILYVEVAR 360 LFGALGYQRK AAFFCRQVAQ LYLQQDNRLA AISAMQVLSM TTDAYRIQSR ASVSKVSVNS 420 ETGLRQPDAG KMHHHSIVSL FESQWSTLQM VVLREILLSA VRAGDPLTAW SAAARLLRWH 480 YPLITPSGQN GLANSLANSA DRLPSGTRCA DPALPFVRLF SFPLHSSQVD IVKRNPARED 540 WWTGSAPSGP FIYTPFSKGD ANESSKQELV WVVGEPVQVL VELANPCCFD LRVDSIFLSA 600 HSRNFDAFPV SVDIPPNSAK VITLSGIPTA VGPVTIPGCT VHCFGVITEH VFRDVDNLLL 660 GAAQGLVFSD PFRSCGSAKL RHVFVPNISV VPPLPLLVAN VVGGDGAIIL YEGEIREVCI 720 NFANAGTVPI EQAHVSLSGK NQDAVISIAN EALQSALPLK PGAQVTLPVT LKAWHVGPVD 780 SDNAVGGGRN AAGNTGKPKD GTSPSLLIHY AGPLSNNGDS QEKESVVPPG RRLVVPLQIC 840 VLQGLSFVKA RLLSMEIPAH VGDNLRDEDI ETESNTDRLV KINPFRGSWG LRFLELELSN 900 PTDVVFEISV FVQLENSAKE DDSSPVQDSP EYEYPKTRID RDYSARVLIP LEHFKLPVLD 960 GSFFTKDPPP GSPSGCRHPS FSEKNTKAEI NALIKNLISK IKVRWQSGRN SSGELDIKDA 1020 IQTALQTTVM DVLLPDPLTF GFRLVRNGLE TDCETKAQSP LSKGSVLSHE VTPMEVLVRN 1080 NTSEAIKLNL SVTCRDVAGQ NCAEGADATV LWADQRIQEK SLVHGAAPPL TAVERFLYGK 1140 KSEALSFKKQ EPSIDRPILK TTSAFEIKND NKENMMFGQR REKILAVNGG NRNVTGEMIV 1200 KGHQKSSTCK EITKKRPYKH VIKGQWTAEE DRKLIKLVRQ HGERKWAMIS ENLEGRAGKQ 1260 CRERWHNHLR PNIKKDCWSE EDEKILVEAH IRIGNKWAEI AQIIQGRTEN SIKNHWNATK 1320 RRLSSKRKHK RSKIADDKSG MDDLSPSAKR PCVLQDYIRG IENNEKDNGG NIITTGGNNV 1380 LATSNLDQFD SDGNSTSSSL MDDPYDEELV FLKNMFLNHP ISIENIDLSQ GPDENSKSSS 1440 SGFMIESPNP KPNSNNDVLG IHHGTMVTDP AKMSHLVSDI YLSDLLNGTA SSSSSSFLPS 1500 INMEHGGENE LIEPQANSAS ERREMDLIEM LSACSTRGSN NWFPFF

Sequence ? help Back to Top

Protein Sequence Length: 1546 aa Download sequence Send to blast

MEPDVSIETL SIIRIAVLPI GTIPPALLRD YHSMLLRHHT IALSAISSFY TEHQKSPFTN  60
QPWDSGSLRF KFVLGGSPPS PWEDFQSNRK ILAVIGLCHC PSSPDLISVT EKFNVACKSY  120
SSALVRRCFA FCPGDSQLED GDKKGENLIL FPPSDKQTQE FHLQTMMQDI AASLLMEFEK  180
WVLQAESAGT ILKTPLDSQA SLNSEEVIKA KKRRLGRAQK TIGDYSLLAG SPVDANAHYS  240
TALELARLTG DYFWYAGALE GSVCALLVDR MGQQDVALED EVRYRYTNVI LHYRKSFIQE  300
IAQRVSPLSF ELEATLKLAR FLCRRELAKE VVELLTNAAD GAKSLIDVSD RLILYVEVAR  360
LFGALGYQRK AAFFCRQVAQ LYLQQDNRLA AISAMQVLSM TTDAYRIQSR ASVSKVSVNS  420
ETGLRQPDAG KMHHHSIVSL FESQWSTLQM VVLREILLSA VRAGDPLTAW SAAARLLRWH  480
YPLITPSGQN GLANSLANSA DRLPSGTRCA DPALPFVRLF SFPLHSSQVD IVKRNPARED  540
WWTGSAPSGP FIYTPFSKGD ANESSKQELV WVVGEPVQVL VELANPCCFD LRVDSIFLSA  600
HSRNFDAFPV SVDIPPNSAK VITLSGIPTA VGPVTIPGCT VHCFGVITEH VFRDVDNLLL  660
GAAQGLVFSD PFRSCGSAKL RHVFVPNISV VPPLPLLVAN VVGGDGAIIL YEGEIREVCI  720
NFANAGTVPI EQAHVSLSGK NQDAVISIAN EALQSALPLK PGAQVTLPVT LKAWHVGPVD  780
SDNAVGGGRN AAGNTGKPKD GTSPSLLIHY AGPLSNNGDS QEKESVVPPG RRLVVPLQIC  840
VLQGLSFVKA RLLSMEIPAH VGDNLRDEDI ETESNTDRLV KINPFRGSWG LRFLELELSN  900
PTDVVFEISV FVQLENSAKE DDSSPVQDSP EYEYPKTRID RDYSARVLIP LEHFKLPVLD  960
GSFFTKDPPP GSPSGCRHPS FSEKNTKAEI NALIKNLISK IKVRWQSGRN SSGELDIKDA  1020
IQTALQTTVM DVLLPDPLTF GFRLVRNGLE TDCETKAQSP LSKGSVLSHE VTPMEVLVRN  1080
NTSEAIKLNL SVTCRDVAGQ NCAEGADATV LWADQRIQEK SLVHGAAPPL TAVERFLYGK  1140
KSEALSFKKQ EPSIDRPILK TTSAFEIKND NKENMMFGQR REKILAVNGG NRNVTGEMIV  1200
KGHQKSSTCK EITKKRPYKH VIKGQWTAEE DRKLIKLVRQ HGERKWAMIS ENLEGRAGKQ  1260
CRERWHNHLR PNIKKDCWSE EDEKILVEAH IRIGNKWAEI AQIIQGRTEN SIKNHWNATK  1320
RRLSSKRKHK RSKIADDKSG MDDLSPSAKR PCVLQDYIRG IENNEKDNGG NIITTGGNNV  1380
LATSNLDQFD SDGNSTSSSL MDDPYDEELV FLKNMFLNHP ISIENIDLSQ GPDENSKSSS  1440
SGFMIESPNP KPNSNNDVLG IHHGTMVTDP AKMSHLVSDI YLSDLLNGTA SSSSSSFLPS  1500
INMEHGGENE LIEPQANSAS ERREMDLIEM LSACSTRGSN NWFPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-43	1221	1322	2	103	C-Myb DNA-Binding Domain
1msf_C	3e-43	1221	1322	2	103	C-Myb DNA-Binding Domain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1319	1330	KRRLSSKRKHKR

Functional Description ? help Back to Top
Source	Description
UniProt	Specific subunit of the TRAPP II complex, a highly conserved vesicle tethering complex that is required for the proper transport of proteins in post-Golgi trafficking pathways to the growing cell plate in mitotic active cells (PubMed:20713617, PubMed:21689172, PubMed:24443495). Required for the polarized and selective transport of PIN2 and probably PIN1 to the plasma membrane (PubMed:21689172, PubMed:24443495). Not required for ER-to-Golgi as well as biosynthetic and endocytic vacuolar transport (PubMed:21689172). {ECO:0000269\|PubMed:20713617, ECO:0000269\|PubMed:21689172, ECO:0000269\|PubMed:24443495}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g32450

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT008594	0.0	BT008594.1 Arabidopsis thaliana clone RAFL19-61-L11 (R50655) At5g11040 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122000.1	0.0	PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog
Refseq	XP_013668099.1	0.0	trafficking protein particle complex II-specific subunit 120 homolog
Swissprot	Q9FY61	0.0	TR120_ARATH; Trafficking protein particle complex II-specific subunit 120 homolog
TrEMBL	M4CXP7	0.0	M4CXP7_BRARP; Uncharacterized protein
STRING	Bra008994.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11050.1	0.0	myb domain protein 64

Publications ? help Back to Top
Thellmann M,Rybak K,Thiele K,Wanner G,Assaad FF Tethering factors required for cytokinesis in Arabidopsis. Plant Physiol., 2010. 154(2): p. 720-32 [PMID:20713617] Qi X,Kaneda M,Chen J,Geitmann A,Zheng H A specific role for Arabidopsis TRAPPII in post-Golgi trafficking that is crucial for cytokinesis and cell polarity. Plant J., 2011. 68(2): p. 234-48 [PMID:21689172] Naramoto S, et al. VAN4 encodes a putative TRS120 that is required for normal cell growth and vein development in Arabidopsis. Plant Cell Physiol., 2014. 55(4): p. 750-63 [PMID:24443495]