PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g31100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 692aa    MW: 76391 Da    PI: 7.7209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g31100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67.1e-06289309526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f + G Ck Gd C +aHg
  Tp6g31100 289 PCPDFKK-GSCKQGDMCEYAHG 309
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.45E-1621163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1727179IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.6870163IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-1070139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.270100IPR002110Ankyrin repeat
CDDcd002043.04E-1472148No hitNo description
PROSITE profilePS5008811.755105140IPR002110Ankyrin repeat
SMARTSM002481.1E-5105137IPR002110Ankyrin repeat
SMARTSM003561.2E-4284310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915289311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4289311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4317347IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.831319343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MCGLSKKLDT ENTCKSMNDA EWEHSFSALL EFAADNNLEG FKRQLSVVSC INQMGLWYRR  60
QRFVRRMVVE QRTPLMVASI YGSLDVVKHI LSFPEAELNL SCGPDKSTAL HCAASGASVN  120
SLDVVKLLLS AGADPNIPDA HGNRPVDVLV VSPHAHGLRT ILEEILKKDE TISEDLHASS  180
SSLGSSFRSL SSSPDNGSSL LSLDSVSSPT KANGMDGTFV SEKKEYPIDP SLPDIKSGIY  240
STDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYTCVPC PDFKKGSCKQ  300
GDMCEYAHGV FECWLHPAQY RTRLCKDGMG CNRRVCFFAH ANEELRPLYA STGSGLPSPR  360
ASSISASTMD MASVLNMLPG SPSAAQHSFT PPISPSGNGV MPHSSMGWPQ QNIPALHLPG  420
SNVQLSRLRS SLNARDIPSE QLSMLQEFEM QRQLVGDMSS PRFMNHSARP KILNPSNLEE  480
LFSAEVSSPR FSDQLAVSSV LSPSHKSALL NQLQNNKQSM LSPIKTNLIS SPKKVDQHSL  540
LQQASSPRAM EPISPMNARM KQQLHSRSLS SRDFGSSLPR DLMPNDSGSP LSPWSSWDQN  600
HGNKVDWSVQ SDELGRLRKS HSLANNNSNR EADVTWAQQL VKDSASPRNS NRVMNMNSAR  660
PLVQGGSSVN PHSDGRESDI LDSWLEQLQL DR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g31100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525220.0AK352522.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399772.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain