PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g30230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29952.9 Da    PI: 8.4728
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g30230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e++s
  Tp6g30230  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFAS 59
               79***********************************************86 PP
2K-box83.16.4e-28751734100
      K-box   4 ssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ss+ +  +++a++++ ++e++ Lk+ei++Lq+++ +l+G++L+ LslkeLq+LeqqL+ +l ++R++K+ ll++q+ee++ ke++++ en++Lr++++e
  Tp6g30230  75 SSDAHliNCKAENQEDCTEVDILKDEISKLQEKHLQLQGKGLNILSLKELQHLEQQLNVALISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 173
                444446689999************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.898161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-32276IPR002100Transcription factor, MADS-box
CDDcd002651.97E-45276No hitNo description
PRINTSPR004043.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-1786171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFAST  60
GMKKTLLRYG NYQGSSDAHL INCKAENQED CTEVDILKDE ISKLQEKHLQ LQGKGLNILS  120
LKELQHLEQQ LNVALISVRE RKELLLTKQL EESRLKEQRA ELENETLRRQ VQELRSFLPS  180
INQHYVPSYI KCFAIDPKNS LVNNTYLDDI NCSLQNTNSD TTLQLGLPGE AHDRRKNEGD  240
RESPSSDSVT TNTTRSTAQR ISLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-25197185MEF2 CHIMERA
6byy_B4e-25197185MEF2 CHIMERA
6byy_C4e-25197185MEF2 CHIMERA
6byy_D4e-25197185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g30230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012192.11e-178agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392951e-164AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3CW261e-164A0A1J3CW26_NOCCA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3H8J41e-164A0A1J3H8J4_NOCCA; Agamous-like MADS-box protein AGL15
STRINGBra006214.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-148AGAMOUS-like 15