PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g28280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 194aa MW: 22062.1 Da PI: 6.5104 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.8 | 5.6e-14 | 73 | 122 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ ++ Tp6g28280 73 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQASD 122 689***************************************99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-11 | 69 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.519 | 71 | 119 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.1E-11 | 72 | 124 | No hit | No description |
SuperFamily | SSF57959 | 1.75E-12 | 73 | 125 | No hit | No description |
Pfam | PF00170 | 9.7E-12 | 73 | 124 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.34E-19 | 74 | 121 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 76 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MQPNYDSSSL SNMQQHDYFH LNHYYNNLNP STNNNLNLIP YPQIQELNLQ SPASNNSTTS 60 DEATGDIFVI NERKQRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN HQLLDKLNQA 120 SDSNGLVLQE NLSLKEQNLE LRQVITSMKT LTGAGGGSRS INGGYCSSSV DHDLDQDFSS 180 ITDDTRTQST HHPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 92 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00512 | DAP | Transfer from AT5G15830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g28280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240101 | 0.0 | AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627967.1 | 1e-111 | PREDICTED: basic leucine zipper 43-like | ||||
Refseq | XP_013740180.1 | 1e-111 | basic leucine zipper 43-like | ||||
Swissprot | Q9FMC2 | 7e-31 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A0D3B1C9 | 1e-109 | A0A0D3B1C9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AG93 | 1e-109 | A0A3P6AG93_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g010620.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10632 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15830.1 | 9e-86 | basic leucine-zipper 3 |
Publications ? help Back to Top | |||
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