PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g28280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 194aa    MW: 22062.1 Da    PI: 6.5104
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g28280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.6e-1473122554
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++L ++l++ ++
  Tp6g28280  73 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQASD 122
                689***************************************99998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1169140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.51971119IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-1172124No hitNo description
SuperFamilySSF579591.75E-1273125No hitNo description
PfamPF001709.7E-1273124IPR004827Basic-leucine zipper domain
CDDcd147022.34E-1974121No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQPNYDSSSL SNMQQHDYFH LNHYYNNLNP STNNNLNLIP YPQIQELNLQ SPASNNSTTS  60
DEATGDIFVI NERKQRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN HQLLDKLNQA  120
SDSNGLVLQE NLSLKEQNLE LRQVITSMKT LTGAGGGSRS INGGYCSSSV DHDLDQDFSS  180
ITDDTRTQST HHPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g28280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401010.0AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627967.11e-111PREDICTED: basic leucine zipper 43-like
RefseqXP_013740180.11e-111basic leucine zipper 43-like
SwissprotQ9FMC27e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3B1C91e-109A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AG931e-109A0A3P6AG93_BRAOL; Uncharacterized protein
STRINGBo3g010620.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.19e-86basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]