PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g26730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 529aa    MW: 58219.9 Da    PI: 4.5659
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g26730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.12.8e-1301605191374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++l la+al++r+  la++++ +m ++a+yf+eALa+r++r        +p+s+ + + s ee+  +  f++ +P+lkf+h+taNq
  Tp6g26730 160 LVQALVACAEAVQQENLILADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IPASSGAVDPSFEEIL-QMHFYDSCPYLKFAHFTANQ 250
                689****************************************************........5555555444455544.457***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
                aIleav++++ vH+iD++++qG+QWpaL+qaLa Rp+gp s+R+Tgvg p+  +++ ++++g++La++A+++gv+fef+ l+++rl+dle+e+++++p  
  Tp6g26730 251 AILEAVATARSVHVIDLGLNQGMQWPALMQALALRPDGPLSFRLTGVGGPS--ERDGIHQLGWKLAQLAQAIGVEFEFKGLTTERLSDLEPEMFETQPeS 348
                *************************************************87..9********************************************9* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E+l+Vn+v++lh ll++++s+e+    vL +vk ++P +v+vveqea+hn+  Flerf eal+yys+lfdsle +l     +++++++++lgr+i nvva
  Tp6g26730 349 ETLVVNSVFELHPLLAQPGSIEK----VLATVKAVKPSIVTVVEQEANHNGVIFLERFNEALHYYSSLFDSLEDGLILP-CHDRVMSEVYLGRQILNVVA 443
                ***********************....*********************************************9998555.5566778888********** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +eg +r+erhetl++Wr+r+++aGF pv+l+++a kqa+lll+ ++ +dgyrvee++gsl+l W+++pL+++SaW+
  Tp6g26730 444 AEGIDRTERHETLSQWRRRMGSAGFDPVNLGSDAFKQASLLLALFGgGDGYRVEENEGSLMLAWQTKPLIAASAWK 519
                ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.6E-322692IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.3E-362698No hitNo description
PROSITE profilePS5098563.499134498IPR005202Transcription factor GRAS
PfamPF035149.9E-128160519IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MTKRTHQETS IEAPSVGKKL EDDNMDELLA VLGYKVRSSD MADVAQKLEQ LEMVLSNDDV  60
LGSNALNETV HYNPSDLSGW TETMLSELSY YPPSPDLDPT WMCNPRPIQD DDECCSTSSN  120
SSKRIRRNGP WCDSTSSEST RPMVVLTDVA VDSQETGVRL VQALVACAEA VQQENLILAD  180
ALVKRVGSLA ASQAGAMGKV ATYFAEALAR RIYRIPASSG AVDPSFEEIL QMHFYDSCPY  240
LKFAHFTANQ AILEAVATAR SVHVIDLGLN QGMQWPALMQ ALALRPDGPL SFRLTGVGGP  300
SERDGIHQLG WKLAQLAQAI GVEFEFKGLT TERLSDLEPE MFETQPESET LVVNSVFELH  360
PLLAQPGSIE KVLATVKAVK PSIVTVVEQE ANHNGVIFLE RFNEALHYYS SLFDSLEDGL  420
ILPCHDRVMS EVYLGRQILN VVAAEGIDRT ERHETLSQWR RRMGSAGFDP VNLGSDAFKQ  480
ASLLLALFGG GDGYRVEENE GSLMLAWQTK PLIAASAWKL NAVAAEWRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5915551814378Protein SCARECROW
5b3h_A4e-5915551813377Protein SCARECROW
5b3h_D4e-5915551813377Protein SCARECROW
5hyz_A4e-591605194375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g26730
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683095.10.0DELLA protein RGL3-like
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLA0A1J3FTF90.0A0A1J3FTF9_NOCCA; DELLA protein RGL3
STRINGBra013973.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]