PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 302aa MW: 33508.9 Da PI: 6.1715

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g25870	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.7e-19	33	83	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a+kkl+g+ Tp6g25870 33 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83 69**999.******8...3.35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.91E-28	32	88	No hit	No description
PROSITE profile	PS51032	20.732	33	90	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-14	33	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-20	33	89	IPR016177	DNA-binding domain
SMART	SM00380	5.2E-34	33	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.8E-29	33	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-10	34	45	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-10	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTYRGVRQR TWGKWVAEIR EPNRGTRLWL 60 GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQQVN RNLSFSGHGS GSWPYRFDTV 120 RGLDLGLGPS NGSRSSWSGS FSFLQEDDHH NSDRCLSSSG SNLSWLLPKR SNSQDQESFD 180 AASVCGSEGG CITFSTKLKP NNLMTAPDYG SSNGVWSRFL VGQEKNDVSS SCGSSDNKES 240 ISVPSGRGDG EEGMHRPEME EGTGYLEMDE LLEIDDLGLL IGKNGDFKNW CCDEFQHPWN 300 WF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-15	34	89	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00519	DAP	Transfer from AT5G18450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g25870

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608387.1	1e-179	PREDICTED: dehydration-responsive element-binding protein 2G-like
Swissprot	P61827	1e-160	DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBL	A0A078GG20	1e-178	A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBL	A0A0D3EED9	1e-178	A0A0D3EED9_BRAOL; Uncharacterized protein
STRING	Bo9g155940.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9978	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18450.1	1e-134	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]