PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g25780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 465aa    MW: 49444.1 Da    PI: 8.2695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g25780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125176227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C +++rtG C yG+rC+F+H++
  Tp6g25780 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76
               6899********************96 PP
2zf-CCCH38.81.6e-1297122227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C++f+rtGtCk+G++Ck++H++
  Tp6g25780  97 GQPVCQHFMRTGTCKFGASCKYHHPR 122
                5789********************96 PP
3zf-CCCH39.87.4e-13145169226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG+Ck+G++C+F+H+
  Tp6g25780 145 GEKECSYYMRTGQCKFGSTCRFHHP 169
                7899********************9 PP
4zf-CCCH37.83.2e-12293318126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C++f+rtG Ck+G +C+++H+
  Tp6g25780 293 PGQPECQYFMRTGDCKFGTSCRYHHP 318
                5789*********************9 PP
5zf-CCCH33.95.5e-11340364327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++fa+ G+Ck+G+ CkF H++
  Tp6g25780 340 AAPCSHFAQHGICKFGPACKFDHSM 364
                589********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-44976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0984977IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27795123IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-1097122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356143171IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10145169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4149168IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77292320IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9294318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4298318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464337365IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6337364IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8340363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5340365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4342364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLEW TATRTETGME ASMWRLGLRG GGGESYPERP DEPDCIYYLR  60
TGVCGYGSRC RFNHPRNRAP VLGGLRTEAG EFPERMGQPV CQHFMRTGTC KFGASCKYHH  120
PRQGGGDSVT TPISLNYMGF PLRPGEKECS YYMRTGQCKF GSTCRFHHPV PPGVQAPSQQ  180
QLSSGPAIYP SLQSQLVPSS QQFGVVIARP QLLPGPYVQS PYGYSQMVLP PGMVPYSGWN  240
PYQASVSAPG TQPSMGSSSV YGITPLSPSA PAYQSGLSSA GLSNKEQSFP QRPGQPECQY  300
FMRTGDCKFG TSCRYHHPLE AASPKDVTLS HIGLPLRPGA APCSHFAQHG ICKFGPACKF  360
DHSMSSSSLS YSPSASSLTD MPVAPYPLGS SSLGTLAPSS SSSSDQRTEL QSSSSTKPKT  420
TTSGGSETVA AGVSSSSSMT GGVTHSEPAE AKNGDSASIE IKTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g25780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197356.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGAT5G18550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]