PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 292aa MW: 33660.1 Da PI: 6.1082

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g22740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	64.3	2.1e-20	111	170	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s++ rsYYrC+++ +C ++k+ ++ +++p v +tY g+H+++ Tp6g22740 111 DGFLWRKYGQKSIKKSDHQRSYYRCSYNidhDCAARKHEQKIKDNPPVYRTTYFGHHTCH 170 9************************9999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-20	103	170	IPR003657	WRKY domain
PROSITE profile	PS50811	19.118	104	172	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-20	106	171	IPR003657	WRKY domain
SMART	SM00774	4.5E-29	109	171	IPR003657	WRKY domain
Pfam	PF03106	5.6E-20	111	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MNSPHEKAVQ AILYGHSCAM RLKLRLGDPT ADDRSISSYD LAKTIVHCFS NAISILSDKP 60 KTEDEQFSDL SSRDSSPPPL PQRKHSKKRK VNSTNSSENW RDDSPHPIYY DGFLWRKYGQ 120 KSIKKSDHQR SYYRCSYNID HDCAARKHEQ KIKDNPPVYR TTYFGHHTCH INHNQDGVFT 180 TVEDPIDDFK SARMIQFGQD LDQEKESHKS GFALPVKHEK DIIEVETMDQ YREITGDDQD 240 CKHVMEENQS SPSGSYTPPS SSGSEMDMLD SDLLLDNLDS WDRFDVFDFG LR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-14	111	169	10	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	QRKHSKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00619	PBM	Transfer from AT5G22570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g22740

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120648.1	1e-163	PREDICTED: probable WRKY transcription factor 38
Swissprot	Q8GWF1	1e-137	WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBL	A0A1J3GT89	1e-171	A0A1J3GT89_NOCCA; Putative WRKY transcription factor 38
STRING	Bra002421.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13673	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	1e-126	WRKY DNA-binding protein 38

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Janda M, et al. Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 59 [PMID:25741350]