PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 292aa    MW: 33660.1 Da    PI: 6.1082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.32.1e-20111170359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                Dg+ WrKYGqK++k+s++ rsYYrC+++   +C ++k+ ++ +++p v  +tY g+H+++
  Tp6g22740 111 DGFLWRKYGQKSIKKSDHQRSYYRCSYNidhDCAARKHEQKIKDNPPVYRTTYFGHHTCH 170
                9**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-20103170IPR003657WRKY domain
PROSITE profilePS5081119.118104172IPR003657WRKY domain
SuperFamilySSF1182902.88E-20106171IPR003657WRKY domain
SMARTSM007744.5E-29109171IPR003657WRKY domain
PfamPF031065.6E-20111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNSPHEKAVQ AILYGHSCAM RLKLRLGDPT ADDRSISSYD LAKTIVHCFS NAISILSDKP  60
KTEDEQFSDL SSRDSSPPPL PQRKHSKKRK VNSTNSSENW RDDSPHPIYY DGFLWRKYGQ  120
KSIKKSDHQR SYYRCSYNID HDCAARKHEQ KIKDNPPVYR TTYFGHHTCH INHNQDGVFT  180
TVEDPIDDFK SARMIQFGQD LDQEKESHKS GFALPVKHEK DIIEVETMDQ YREITGDDQD  240
CKHVMEENQS SPSGSYTPPS SSGSEMDMLD SDLLLDNLDS WDRFDVFDFG LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141111691068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189QRKHSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120648.11e-163PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-137WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A1J3GT891e-171A0A1J3GT89_NOCCA; Putative WRKY transcription factor 38
STRINGBra002421.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-126WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]